Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq144 141 1e-28 seq130 89.7 6e-13 >seq144 Length=62325 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||| | || |||| ||||| || |||||| || || ||||| || | Sbjct 23953 ACCACCTCGTAATCTCAGAACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCTGA 23894 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||| |||||||| || |||||||| ||||||| ||| Sbjct 23893 GAGTGTTCTGCCGTCCTCGAGTTGCTTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGG 23834 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| |||||| |||| | | | |||||| ||||| || Sbjct 23833 AATGCCTTCCTTGTCTTGGATTTTCGACTTGACATTGTCGATTGTGTCGGAGGATTCAAC 23774 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 23773 TTCGAGCGTGATGGTTTTGCCTGTTAGAGTCTTGACAAAGATTTGCAT 23726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||| || || || ||||| || || || || | Sbjct 23485 ACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC 23426 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| ||||||||||| || || || || ||||||| || | || |||||| Sbjct 23425 ATCTTCAAGCTGTTTACCAGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCCTCCTT 23366 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || || | | | | |||||||| || || || || | ||||| Sbjct 23365 GTCCTGGATCTTGCTCTTTACATTATCGATGGTGTCGCTAGACTCGACCTCAAGGGTGAT 23306 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| ||||| || || ||||| || ||||| ||||| || Sbjct 23305 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 23267 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||||||||| | || | |||| || | ||||||||||| ||||| ||||| || | Sbjct 24182 GACCTCCTCTCAGTCGGAGAACCAGGTGTAGCGTGCTCTCCTTCTGAATGTTGTAGTCGG 24123 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||||| || | || || | ||||||||||| || || | |||||| || || | | Sbjct 24122 AAAGAGTACGACCATCCTCCAATTGCTTACCAGCAAAGATTAATCGCTGTTGATCCGGGG 24063 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTC 42157 | | | |||||||| | ||| | || | |||| ||| | | | ||||| ||||| Sbjct 24062 GAATACCCTCCTTGT-CTTGAATCTTGGACTTGA-CGTTGTCAATGGTGTCTGAAGATTC 24005 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 24004 GACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 23954 >seq130 Length=70983 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 37990 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 38049 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||||| ||| | | |||||||||| ||| || |||| | Sbjct 38050 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 38109 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 38110 CGATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGA 38169 Query 42199 AG 42200 || Sbjct 38170 AG 38171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209337018400