Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq53 132 5e-26 seq144 105 7e-18 >seq53 Length=169705 Score = 132 bits (146), Expect = 5e-26 Identities = 306/452 (68%), Gaps = 23/452 (5%) Strand=Plus/Minus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 |||| | || ||||| || |||||||| | || || |||||| |||||| ||| Sbjct 76536 AGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATTTTCTTCTCCGGCTCGTTTGCCTCCA 76477 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 |||| | | || | | ||| | ||||| || || || ||| |||||| | || | Sbjct 76476 TCTTCTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTTACCTTCTCCAACGAACTCATCT 76417 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC------TACTACAAGACGCGCG 52569 | || ||||| || ||||||| ||||| || |||||| | | || | | | Sbjct 76416 CCCGAGACGAGGGCATGCACACTGACTTCGCATGCCTCCTTCTCTCCCACCTCAACCACC 76357 Query 52570 TGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGT--TCAAGGAGGCGGTGGCTAT 52627 | || ||| |||| | || |||| | || ||| ||||| || | || Sbjct 76356 -GTCCATCAAA--GGAT---GTCAT-----TGAGAAAGTCATCATCGAGGCCGTCGGCAT 76308 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 ||| |||| || |||||| || || || |||| ||| ||||||||||| | | | Sbjct 76307 CGAGCAGGAATTCCTTACGGAAGCCCTCCCCGTCGCTCTGTTGGGCATGAAC-CATACCC 76249 Query 52688 -CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG-CCA 52745 |||| |||| |||||||| || || || || |||||||| |||| ||||| || Sbjct 76248 TCATGAAGCAGTATATCGAGTTCGTCGCCGACCGACTGTTGGT-CAGCATGGGCAATCCC 76190 Query 52746 AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 ||||||| ||| ||| ||| || || || || ||| | ||||| || || | |||||| Sbjct 76189 AAGTACTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATCTCCCTGGCCGGCAAG 76130 Query 52806 ACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || ||||| ||||||||||| ||||| || || Sbjct 76129 ACTAACTTCTTCGAGAAGCGCGTCGGTGATTA 76098 >seq144 Length=62325 Score = 105 bits (116), Expect = 7e-18 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | |||||| ||||| | ||| ||||| | | | Sbjct 24145 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAATTGCTTACCAGCAAA 24086 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||||| |||||||| ||||| || ||||| || ||||| ||| | || | || | | Sbjct 24085 GATTAATCGCTGTTGATCCGGGGGAATACCCTCCTTGTC-TTGAATCTTGGACTTGACGT 24027 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | || || || || | || | || || ||||| ||||| || Sbjct 24026 TG-TCAATGGTGTCTGAAGATTCGACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTG 23968 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 23967 ACAAAAATCTGCAT 23954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | ||||||| || || ||||||||||||||| Sbjct 23496 CCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTC 23437 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || |||||||| | | || ||||| |||||||| || || Sbjct 23436 AAGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAAATAAGACGTTGTTGGTCGGGGGGA 23377 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || |||| | || | ||||||| | ||||| ||| Sbjct 23376 ATGCCCTCCTTGTCCTGGATCTTGCTCTTTACATTATCGATGGTGTCGCTAGACTCGACC 23317 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || || || || |||||||| Sbjct 23316 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 23270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| || | || ||| | || | | |||||||| || ||||||||||| Sbjct 23952 CCACCTCGTAATCTCAGAACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCTGAG 23893 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||||||||| || || | |||| || ||||||||||| || || Sbjct 23892 AGTGTTCTGCCGTCCTCGAGTTGCTTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGA 23833 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | |||| || | ||||||| || || || Sbjct 23832 ATGCCTTCCTTGTCTTGGATTTTCGACTTGACATTG-TCGATTGTGTCGGAGGATTCAAC 23774 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||| || || ||||| || ||||| || ||||| Sbjct 23773 TTCGAGCGTGATGGTTTTGCCTGTTAGAGTCTTGACAAAGATTTGCAT 23726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 23724 CCACCACGGAGACGAAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 23665 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | |||| || | ||| ||||| ||||| Sbjct 23664 AGGGTTCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCAGGAGGA 23605 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | ||||||| ||||| | Sbjct 23604 ATTCCTTCCTTGTC-CTGAATCTTGCTCTTGACGTTG-TCGATAGTGTCGGATGACTCAA 23547 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||||| || || || || |||||||| Sbjct 23546 CCTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 23498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259236327200