Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq52 322 6e-83 seq53 118 1e-21 >seq52 Length=173047 Score = 322 bits (356), Expect = 6e-83 Identities = 1207/1858 (65%), Gaps = 75/1858 (4%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | |||| | | ||||||||||||||| ||||||||||| | Sbjct 73283 TGAACTGAATTGGTGCGGATGCGGCCATCGTTCGGAGGTAGTACATACCCGTCTTGAGAC 73224 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGA-CTTTCCA-T 115643 || ||||||| || | ||||| || | | |||| | ||||| ||||| | | Sbjct 73223 CCATCTTCCAGCCAGCGAAGTGCATGGACGTAATCTTGCCCATGGTTGGCTCTTTCAAAT 73164 Query 115644 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 115703 | || ||| | | || |||||||| ||||| || || || || ||||| | || Sbjct 73163 G--GATGTTGAGAGACTGCGATTGATCAATGAAAGCACCACGGTCGGCGGCCATTTGGAT 73106 Query 115704 CACATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 | || ||| | ||| | ||||| || || |||||||| |||||||||| ||||| Sbjct 73105 GA--TCGTTCGTTGTGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTAATATCAGCTGGG 73048 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 || | | || |||||||| ||||| || | || || | |||||| | | | Sbjct 73047 ATGTTCGGGACGTTTTGGATGGAGCCTCCATCGGCGATGATTCTGTTCTTCATGTTGTCT 72988 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTA---TTGACAACAACAAAC 115878 ||||| ||||||| | || |||| ||| || | ||||| || || Sbjct 72987 GACCATAGACCAAGATCAACAAGGTCCTT---GAGAAGCCAAGGGTTGACGACTTGGAAT 72931 Query 115879 TCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 || || || | | || | ||| |||||||||| |||||||||||| |||||||| || Sbjct 72930 TCGCCAGCCAAGACTCGACG-AGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTT 72872 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| ||||| || || | || || || || ||||| || || | ||| || |||||| Sbjct 72871 GTTGCCCAAAATCTGTGAGGTAGATGCAGTTGGCATAGGAGCAACGAGGAGCGAGTTGCG 72812 Query 115998 GAGACCCACCCCCCTAATGCGTTC-----CTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT 116052 | |||| || | ||| || ||| | | ||||||||| | || | | Sbjct 72811 AA----CACCATGCTGA-GCGATCTTCGCCTTCAAGCTGTCCCAGTCCCAAA-GATCGGT 72758 Query 116053 --GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 116110 || || | | |||| | ||| |||| || |||||||| ||||| || ||| Sbjct 72757 AGGTGTCACTC-CCCAGAGATCGTACTGAAGCTGGCCTTGGGAGATCGGCGAGCCTTCAT 72699 Query 116111 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG--AGCTCGCCTC--GAGG-----G 116161 |||||||||| || ||| | || ||||| ||||||| | | || | Sbjct 72698 ATGTCTCATAAGGACCC---AGCTG------TTCGGCGAGCTCGCATGATGCGGTCAATG 72648 Query 116162 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAA 116221 | ||||| || || ||||| || || || |||| ||||||||| ||| || | Sbjct 72647 CAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTCAGCTGCTTGGCCTCAGGGGATTCGA 72588 Query 116222 ACGCGAGACG--GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 116279 | | || || | | || || |||| |||||||||||||| ||||| || || || Sbjct 72587 ATGGCAGTCGAAGTGCCAAGAAAG--CATCAGCGAGACCTTGGACGCCGAGACCGATAGG 72530 Query 116280 GCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAA 116338 |||||||| | || ||| || ||| ||| || || | || | || |||| Sbjct 72529 CCGATGTCTAAAGTTGCTCTTCTTGGCT-TCTGGCACTGGGTAGTAGTTGATCTCAATAA 72471 Query 116339 CCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC 116398 | | || | || ||||| | |||| || |||| || || || | || | | Sbjct 72470 TCTTGTTCAAGTTCTTGGTCATGACCTGGATGGTTTCGTGGAGACGACCGAAGTCGTA-C 72412 Query 116399 TGCGAGTC-TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 116457 || || | || | ||| | || || |||| || |||||||| || |||| Sbjct 72411 TGACCCTCGTTTTGGTCGACGAAGGACGGCAGAGCGACCGAAGCCAGATTGCAGACAGCA 72352 Query 116458 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 116517 ||| || | |||||||||| | ||| || || ||||| || || ||| |||||| Sbjct 72351 ACCTCGTCAGGAGCAGTGTACTCGACAATCTCAGTGCACAAGTTCGAGGACTTGATGGTG 72292 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 || | |||||| || || |||||| |||| || ||||||||||| ||||| | || | Sbjct 72291 CCAAGGTTCTTCTGGTTGGACTTTCTGTTGCAAGCATCCTTGTAAAGCATGAACGGGTTG 72232 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGC 116636 |||||||| ||||| | | | ||||| | ||| | | || | | || || ||| Sbjct 72231 CCCGTCTCTGTTTGTGCTTCCAAGATAGCATACCACAGCTTCTGTGCCT-TCATAGT-TT 72174 Query 116637 GTTG-GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG 116695 || | |||| || ||| |||||| || | | || || || ||||| || ||| || Sbjct 72173 GTCGACCTCGACCTTCCCTCTCGTATTTCTCGAAAAGTGCTTCGAACTCGTC-GCCATAG 72115 Query 116696 C-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | ||||| || || || |||| || || ||||| |||| ||| | || ||| Sbjct 72114 CAGTCTGATAGACCAGGCGCCTCATTCGGGCAGAAAAGAGTCCAGTCTTGGTTCTTCTCC 72055 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || ||||||||||| | || |||||||| || || |||| | ||| ||| | | | Sbjct 72054 ACTCGCTTCATGAACAAATCGGGGATCCACAGAGCATAGAACAAATCACGAGCTCTAACC 71995 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 || || | || ||||| || | | || || || | | ||| || ||||| || Sbjct 71994 TCCTCCTTTCCGTGATTCTTTCGGAGGTTCATGAACTCAAATACATCGGCATGCCAAGGC 71935 Query 116875 TCCAGGTACACCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTC 116928 || || || | |||| | || |||| |||| | || | ||||| | Sbjct 71934 TCAAGATAGATGGCGAAGGCGCCAGGTCTCTTG---TTACCACCTTGATCGACATAGCGG 71878 Query 116929 GCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC 116988 || || || ||| || | |||||| || | || ||| | ||| || || || || Sbjct 71877 GCGGTGTTGTCAAAGACCCTAAGCATGGGTACGAGACCGTTGGATGTACCGTTAGTGCCG 71818 Query 116989 CGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 117046 || || ||| | | | |||| || | ||| | | || |||||| || || || Sbjct 71817 GCAATGTATGAGCC--GGTAGCTCGGATTTTGTGAACATTCAGACCAATGCCACCAGCAT 71760 Query 117047 ACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 117106 |||||||| || || | ||||| || ||||||| || || || ||||| ||| Sbjct 71759 TTTTTGAGATCATAGCACAAGTCTTGAGAGTGTCGTAGATACCCTCTATTGAGTCTTCCT 71700 Query 117107 TATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGG 117166 | | ||||||||||||| |||||||||| |||||| || |||||||| || | Sbjct 71699 TCATGTCGATGAGGAAGCAAGATGACATTTGTGCTTGTGGTGTGCCTGCGTTGAACAGAG 71640 Query 117167 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGG 117226 | || | || || | ||||| ||||||||| | ||||||||| | | | Sbjct 71639 TGGGCGAGGCATGTGTAAACATCTTTTGGGACATGAGGTTGTAGGTCTCGATGGCCTTTT 71580 Query 117227 GAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 |||||| || |||||||| || | ||||| ||||||| ||||| ||||| | ||| Sbjct 71579 CAATGTCGTCTCCGTGAATGCCTACAGAGACACGCATAAGCATGTGCTGGGGCCTCTCCC 71520 Query 117287 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | | || || || ||||||| ||||||||||||||| ||||| || Sbjct 71519 AGACTTTTCCGTCATATTTCAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCAAAGTA 71462 >seq53 Length=169705 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| |||||||||||||| || |||||| ||||||||||||||||| |||||| Sbjct 76404 CCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAGGTAAGACCTGGCATGAGACCTCGCTTC 76463 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||| ||||| |||||||| || ||||| || || || Sbjct 76464 TTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAGAAAATACCCTCGACGGCAGCAAAG 76523 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACTG 127716 || | ||||||| || || | || | |||| | | | ||| | ||||| | Sbjct 76524 GCGACGAGACGCTGAGCGAATGTGC-TCTCCTTGTCTGAGATCCATCGAAGAGCCCATTC 76582 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| ||| ||||||||||| || | ||| || || || || | || ||| Sbjct 76583 GGCCTTCTTCCTGATACATGGGATTGTGTCGATAGCGTCGAACAGGTACTGCTT 76636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503288891600