Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq144 107 2e-18 seq52 107 2e-18 >seq144 Length=62325 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || || ||||||||||||| | |||| | ||||| Sbjct 23478 ACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCA 23419 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| ||| |||| ||||| ||||| || || || | ||||| || || | Sbjct 23418 AGCTGTTTACCAGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 23359 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | ||||| | | || || || || || || | ||| Sbjct 23358 ATCTTGCTCTTTACATTATCGATGGTGTCGCTAGACTCGACCTCAAGGGTGATGGTCTTG 23299 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||| ||||| Sbjct 23298 CCAGTGAGGGTCTTGACGAAGATCTGCAT 23270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || | || |||| || ||||| || || || || || |||||||| Sbjct 23952 CCACCTCGTAATCTCAGAACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCTGAG 23893 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| || |||| ||||| || || || ||| | || || |||||||| || || || Sbjct 23892 AGTGTTCTGC-CGTCCTCGAGTTGCTTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGG 23834 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||| || || | | || | ||||| | || |||||| Sbjct 23833 AATGCCTTCCTTGTCTTGGATTTTCGACTTGACATTGTCGATTGTGTCGGAGGATTCAAC 23774 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || | |||||| || ||||| || ||||||||||||||| Sbjct 23773 TTCGAGCGTGATGGTTTTGCCTGTTAGAGTCTTGACAAAGATTTGCATA 23725 >seq52 Length=173047 Score = 107 bits (118), Expect = 2e-18 Identities = 300/460 (65%), Gaps = 3/460 (1%) Strand=Plus/Minus Query 131638 GTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCT 131697 ||||| || ||||||||||| |||||||| || | ||| | || || |||| ||| | Sbjct 72064 GTTCTTCTCCACTCGCTTCATGAACAAATCGGGGATCCACAGAGCATAGAACAAATCACG 72005 Query 131698 AGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGC 131757 |||| | ||| || | || | | ||| | || | || || || | || || Sbjct 72004 AGCTCTAACCTCCTCCTTTCCGTGATTCTTTCGGAGGTTCATGAACTCAAATACATCGGC 71945 Query 131758 ATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAAC 131814 |||||| || || | ||| | || | ||||| | ||| ||| ||||||| || Sbjct 71944 ATGCCAAGGCTCAAGATAGATGGCGAAGGCGCCAGGTCTCTTGTTACCACCTTGATCGAC 71885 Query 131815 ATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATT 131874 || || | |||||| | || | | |||||| | | |||||||| | || || Sbjct 71884 ATAGCGGGCGGTGTTGTCAAAGACCCTAAGCATGGGTACGAGACCGTTGGATGTACCGTT 71825 Query 131875 GGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 |||| |||||| ||| | |||| |||||||||||| || || ||||| || || Sbjct 71824 AGTGCCGGCAATGTATGAGCCGGTAGCTCGGATTTTGTGAACATTCAGACCAATGCCACC 71765 Query 131935 GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 | | ||| ||||| | || || | | ||||||| |||||||| || | ||| Sbjct 71764 AGCATTTTTTGAGATCATAGCACAAGTCTTGAGAGTGTCGTAGATACCCTCTATTGAGTC 71705 Query 131995 CGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAA 132054 | ||||||| | |||||||| |||| ||| || |||||| || || Sbjct 71704 TTCCTTCATGTCGATGAGGAAGCAAGATGACATTTGTGCTTGTGGTGTGCCTGCGTTGAA 71645 Query 132055 CAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATG 132094 || ||||| ||| |||||||| | |||| || |||| Sbjct 71644 CAGAGTGGGCGAGGCATGTGTAAACATCTTTTGGGACATG 71605 Score = 98.7 bits (108), Expect = 8e-16 Identities = 272/415 (66%), Gaps = 14/415 (3%) Strand=Plus/Minus Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597 |||||||| || |||||||||||||| ||||| || | ||| || ||||| | || || Sbjct 73161 ATGTTGAGAGACTGCGATTGATCAATGAAAGCACCACGGTCGGCGGCCATTTGGATGATC 73102 Query 130598 GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657 ||| | | |||||||| |||||||||| || || |||| | || ||| | Sbjct 73101 GTTCGTTGTGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTAATATCAGCTGGGATGTTC 73042 Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTAC 130717 | | ||| | | || | ||| || ||| ||| ||| || || || Sbjct 73041 GGGACGTTTTGGATGGAGCCTCCATCGGCGATGATTCTGTTCTTCATG---TTGTCTGAC 72985 Query 130718 AAT---CCAAGCTGTACAAGATCTTTTA----CCAAATGATTATTAATGATTTGAAAATC 130770 || ||||| | ||||| || || | |||| | || | || ||| || || Sbjct 72984 CATAGACCAAGATCAACAAGGTCCTTGAGAAGCCAAGGG----TTGACGACTTGGAATTC 72929 Query 130771 ACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTT 130830 ||||||| ||| || | | ||| |||||| |||| | || || ||| | |||||||| Sbjct 72928 GCCAGCCAAGACTCGACGAGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTT 72869 Query 130831 GCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAG 130890 ||| || || |||| |||| ||| || ||||| || || | || || || |||| Sbjct 72868 GCCCAAAATCTGTGAGGTAGATGCAGTTGGCATAGGAGCAACGAGGAGCGAGTTGCGAAC 72809 Query 130891 ACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGT 130945 ||| ||| | ||| || |||||| ||||| ||||| ||| ||||||| Sbjct 72808 ACCATGCTGAGCGATCTTCGCCTTCAAGCTGTCCCAGTCCCAAAGATCGGTAGGT 72754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931758767120