Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1008 105 1e-17 seq1604 86.0 1e-11 >seq1008 Length=41606 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 || ||||| || | || ||| |||||||| || ||||| ||||| || | |||| Sbjct 2237 GGTATGAATGCAAACCTCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTC 2296 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || | || | ||||| || ||| ||||| ||||| || | || |||||| |||| Sbjct 2297 GCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAGAACATT 2356 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 ||||| || ||||| ||||||||||||||||| ||| |||| || |||| | | ||| Sbjct 2357 TCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGCGTCGGTGATTACCAGAAGGCCGGT 2416 Query 230632 GTGATG 230637 || ||| Sbjct 2417 GTTATG 2422 >seq1604 Length=18022 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGA--GGGGAACCCTTC 319868 ||| || |||||||| ||| | ||||||| ||| || | | | |||||| || || Sbjct 6307 GTCAAGGTCGTGTTCGACGAAGACAGTTTT---AACCTCGCTCTGCTTGGGGAAGCCCTC 6251 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 | ||| |||| || ||||||||||| ||||| || |||| ||||| || || || Sbjct 6250 GACCTGTTCGTTGTTGATGGCGCGCATCAGAGTTGACTTGCCCGAACCGTTGGGACCGCA 6191 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||||| || || || || | | || | ||| || || ||||| | Sbjct 6190 AAGACCGTAGCGACGACCACGCTTTAGTCGTAGGTGTGTCTGGTTGAGCAGGATTTTGGC 6131 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||| || || ||||| ||| |||| || ||||||||||| Sbjct 6130 ACCGTAGGCGAGAGAGAATGTGCAATTGCAGAGATCCTCACC 6089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057800159622170