Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1008 104 2e-17 >seq1008 Length=41606 Score = 104 bits (114), Expect = 2e-17 Identities = 199/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || ||||| || | | ||| | || ||||| |||||||| || ||||| Sbjct 1793 ATATAGGTGTCAATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGG 1734 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATCGTTCCGCCA 16589 || || |||||||||||||| || | || || || || ||| ||| || || | | Sbjct 1733 AAACCGTAGAAGCATCGAGCTTCGGGAATCTGAACCTCGCCACTGAAA--CGCTCAACAA 1676 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 | ||||| || ||||||||||| || ||||| || ||||| ||||| |||||| | Sbjct 1675 GATTCTCGTTGACGATACCGTCCGAGGCGGCAAAGAAGGCCAAGATGTGGGAAATGAAGT 1616 Query 16650 ATTTTTCGTC--AGATG-TAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 |||| ||||| | || | | | | ||| || | | || ||||| | ||| | | Sbjct 1615 ATTTCTCGTCTTCGTTGATTCGGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCGATCT 1556 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | |||| ||||| ||| ||| | || || || ||||||| ||| || Sbjct 1555 CCTCTGCAGTCCAGAAGGATGCCTCGGCTTTCTTGTACATTTGCCAGAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403155275880