Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1336 237 2e-57 >seq1336 Length=25880 Score = 237 bits (262), Expect = 2e-57 Identities = 484/713 (68%), Gaps = 6/713 (1%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||||||||| || || | |||| | | | |||| ||| || | ||| ||||||| | Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| |||| | || ||||||||||| || ||||||||||||||||| |||| || Sbjct 5402 CCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAA 5461 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || || | | | | |||||| || || |||||| ||||| |||||| | | Sbjct 5462 GAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAA 5521 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||| || ||||||||||| | ||| || | | | | || || ||||| || || || Sbjct 5522 TACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACC 5581 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||| | ||| | |||||||| || | || | ||||| || | || ||||| || Sbjct 5582 TTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGA 5641 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGATAGA 54307 | |||||||| |||| || || || ||||||| ||| | || ||| || Sbjct 5642 CGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAGG 5699 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCC 54366 || || || || ||||| || || || | || ||| ||||||| || ||||| ||||| Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGCC 5758 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||| ||||||||||| |||||| | | || ||| |||||| || | | || Sbjct 5759 CTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGT 5818 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 ||| ||||| || | ||||| ||||| || || || |||| || | || ||||| Sbjct 5819 TCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTA 5878 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 ||||||| || || | ||| | ||| ||||| || |||||||| | ||| Sbjct 5879 GGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCAT 5938 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 |||||||||||| || || ||||| || || ||||| | || ||| |||| ||| Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || || || || || | ||| ||||| || || || | ||| | |||| Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 6051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708545546320