Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1368 93.3 4e-14 seq1413 89.7 4e-13 >seq1368 Length=24850 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | |||||| || ||||||| ||||| ||||| || | | Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 |||| | |||||| ||| ||| | || |||||||| |||||| ||||| | | Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 8148 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || || ||| || | ||| ||||||||||| || | || ||||| | Sbjct 8147 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 8088 Query 21166 ATATTTGCA 21174 | || |||| Sbjct 8087 AGATCTGCA 8079 >seq1413 Length=23416 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| |||||||| ||||| || ||| || ||||| Sbjct 19287 AGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCC 19346 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | ||||||| ||| || || || | ||||||||||| Sbjct 19347 TCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCT 19406 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| || || | || ||| | ||||| ||| Sbjct 19407 TGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTC 19466 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || ||||| || |||||||| Sbjct 19467 TTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | ||| |||||||| || || || || || | Sbjct 19044 CCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTC 19103 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | || |||||||| || || || | ||||| | ||||||||| || Sbjct 19104 AGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGA 19163 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| ||||| | | | | ||||| | ||| | Sbjct 19164 ATACCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACT 19223 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || || || ||||| || || ||||| Sbjct 19224 TCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250147686444