Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1008 159 4e-34 seq1001 158 1e-33 seq1368 143 3e-29 seq1413 123 3e-23 >seq1008 Length=41606 Score = 159 bits (176), Expect = 4e-34 Identities = 206/284 (73%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || |||||||| || |||||||| | |||||| | || ||| Sbjct 1507 ATCTGGCAAATGTACAAGAAAGCCGAGGCATCCTTCTGGACTGCAGAGGAGATCGATCTG 1566 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | || | ||||| ||||| | ||||| Sbjct 1567 TCCAAGGACCTCCACGACTGGAACAACCGAATCAACGAAGACGAGAAATACTTCATTTCC 1626 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||||| || |||||| ||||| ||||||||||||||||| || |||||| Sbjct 1627 CACATCTTGGCCTTCTTTGCCGCCTCGGACGGTATCGTCAACGAGAATCTTGTTGAGCGT 1686 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | |||| || || ||||||||||| || |||||| ||| Sbjct 1687 TTCAGTGGCGAGGTTCAGATTCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGATG 1746 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||| | ||||| || | || || ||||| ||||| || Sbjct 1747 GAGAACATCCACTCCGAGACATACTCTCTGCTCATTGACACCTA 1790 Score = 120 bits (132), Expect = 3e-22 Identities = 230/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 || ||| | || ||||| ||||| || || ||||||| || ||||||| | || Sbjct 1967 CGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTATC 2026 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| || || || |||||||||||||| ||| |||||||||||||| Sbjct 2027 TTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCG 2086 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217 | ||||| ||||| || ||||||||||||| | |||| || ||| | | || Sbjct 2087 CGTGACGAAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCACTTGAAGAACCGG 2146 Query 117218 CCGAGCGCGGCGCGCGT-CAGGGAG--ATCGTCACCGACGCGGTCGCCATCGAGCAGCGC 117274 || ||| | ||| | | || ||||| ||| || || |||||||| Sbjct 2147 CCCAGCAAAGAAGTCGTAGAAGCAGTTATCGT---CGATGCCGTGAGGATCGAGCAAGAA 2203 Query 117275 TTCCTCACCGAAGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGC 117332 ||||| || || || || || ||| ||||||| || | || ||| || | ||| || Sbjct 2204 TTCCTGACAGAGGCTCTACC-TTGCGGTCTGCTCGGTATGAA-TGCAAACCTCATGAAGC 2261 Query 117333 AATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | ||||| |||||||| ||||| | ||||| Sbjct 2262 AGTACATTGAGTTCGTGGCCGATCGTCTGCT 2292 >seq1001 Length=42108 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| || || | | | Sbjct 35384 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC 35443 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 35444 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 35503 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 35504 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 35563 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| || || || ||| |||| Sbjct 35564 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCG 35598 >seq1368 Length=24850 Score = 143 bits (158), Expect = 3e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || ||||||||||| ||||||||| |||| ||||| || ||| Sbjct 8079 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCG 8138 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | | ||| || || | ||||| ||||| |||||| |||| |||| Sbjct 8139 ACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCAGC 8198 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| ||| ||||| ||||| || |||| || |||||| ||||||||||| Sbjct 8199 AGCGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACA 8258 Query 40871 TCCAGAAGG 40879 ||||||||| Sbjct 8259 TCCAGAAGG 8267 >seq1413 Length=23416 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 20009 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 19950 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 19949 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 19890 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | || | ||| || || || ||||| || | |||||| | ||||||||| Sbjct 19889 CAACGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAC 19830 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| || || || || ||||| || | || ||| Sbjct 19829 ATCCAGAAGGAGAGCACTCTCCACCTGGTATTGCGTCTGCGAGGTGGC 19782 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || || || || || || ||||| | || || ||| | | |||| Sbjct 19719 TAGTCGTCAAGACCCTGACTGGAAAGACGATCACACTTGAGGTTGAATCTTCGGACACTA 19660 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || |||| |||||||||||||||||| | |||||||| || Sbjct 19659 TCGACAACG-TCAAGTCGAAGATTCAGGACAAAGAGGGCATCCCCCCCGACCAGCAGCGC 19601 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 | || | || || || ||||| || |||| || || |||| ||||||||||||||| Sbjct 19600 TTGATTTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACACTCAGTGACTACAACATCCAG 19541 Query 40876 AAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||| || || || ||| ||||| | | |||||| Sbjct 19540 AAGGAGAGCACCCTCCACCTTGTGCTGCGCCTTCGTGGCGGC 19499 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || || || | || |||||| | | Sbjct 19498 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCA 19439 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| || || ||||| | || || Sbjct 19438 GACACCATCGACAACG-TAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCA 19380 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| ||| || || |||||||| |||| || || || | ||||||||| Sbjct 19379 ACAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACAA 19320 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | ||||| || | ||| | || ||| | || || Sbjct 19319 CATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGG 19272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || ||| | | Sbjct 19270 ATGCAGATCTTCGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAATCGTCA 19211 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| || || || || | ||||| Sbjct 19210 GATACCATTGACAACG-TGAAGAGCAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCA 19152 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| || | || || || | ||| ||||| Sbjct 19151 GCAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGAACTCTGAGCGATTACAA 19092 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || || |||||| Sbjct 19091 TATCCAGAAGGAGTCTACTCTCCACCTAGTG 19061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515207871617840