Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 127 2e-24
seq1001 102 7e-17
seq1368 98.7 9e-16
>seq1413
Length=23416
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || || | | ||||||||| | |||||||| || ||||||||||| ||||
Sbjct 19270 TACCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGC 19329
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| | ||| || ||||| ||||| || |||||| |||| || ||||| ||||||||||
Sbjct 19330 TTAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAG 19389
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || ||||||||| || || || || | |||| |||||| | ||||
Sbjct 19390 GGATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGA 19449
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| || | || | ||| || ||||| || || || || || || ||||||
Sbjct 19450 CTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499
Score = 102 bits (112), Expect = 7e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
||| |||| ||||| || ||| || || |||||||| || || ||||| |||
Sbjct 19797 CAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 19856
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || ||||||||| | || | || ||||| || ||||| ||||||||||||||
Sbjct 19857 TTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTC 19916
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
||| || || || | |||| ||||||| ||| ||||| | ||| | ||
Sbjct 19917 CTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGT 19976
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || ||||| || || || |||||||||
Sbjct 19977 CTTGCCAGTGAGAGTCTTAACGAAGATCTGCATG 20010
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||||| |||||||| || || || ||||||||||||| ||| || ||| ||
Sbjct 19061 CACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTC 19120
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| |||| || |||||||| || ||||| || || ||||||||
Sbjct 19121 CAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 19180
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | || | ||| || | || || || | ||| | || ||
Sbjct 19181 AATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTT 19240
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || || ||||||||
Sbjct 19241 TCCTGTCAATGTCTTGACGAAGATCTGCAT 19270
>seq1001
Length=42108
Score = 102 bits (112), Expect = 7e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||| | ||||| || ||| || || |||||||| ||| | || || ||
Sbjct 35596 CAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTC 35537
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||||||| || || ||| |||| ||||| ||||| ||||| || ||||||||||||||
Sbjct 35536 CTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTC 35477
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| |||||| | ||| ||||||| ||| | ||
Sbjct 35476 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGT 35417
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || || || || || || |||||||||
Sbjct 35416 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 35383
>seq1368
Length=24850
Score = 98.7 bits (108), Expect = 9e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | || || ||||| ||||| || || ||| ||||
Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|||||||||||||| || || || ||||||||||| || || || || | |||
Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 8146
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||| | | ||||||||||| ||| | || ||||| || || || || || ||
Sbjct 8145 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 8086
Query 118731 ATCTGCA 118737
|||||||
Sbjct 8085 ATCTGCA 8079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433821099625228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |