Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 143 2e-29
seq1413 125 5e-24
seq1368 113 3e-20
>seq1001
Length=42108
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||| ||||| | || || || ||||| ||||||||||||||
Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| |||| |||| || | ||||||||| ||||| || || || ||||||||| |||
Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | ||| |||| || ||
Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACC 35431
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| ||||| || || || |||||||||||
Sbjct 35430 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384
>seq1413
Length=23416
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||||||| | ||| || || ||||| ||||||||||| |||
Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842
Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || ||| | || |||| ||||| || |||||||| | || |||||||| ||
Sbjct 19843 AAGGTG-CGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGG 19901
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | || | | || | || | || || ||
Sbjct 19902 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCAC 19961
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| |||||||| || || |||||||||||
Sbjct 19962 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | ||||| ||||| | |||| || ||||| || ||||| ||| |
Sbjct 19044 CCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTC 19103
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||| || ||||| || || ||||||||||| ||
Sbjct 19104 AGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGA 19163
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | | | | || | ||| | |||||| ||
Sbjct 19164 ATACCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACT 19223
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| || || || | || || || |||||||||||
Sbjct 19224 TCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||||| ||| || ||||| |||||||||||| || ||| ||||
Sbjct 19287 AGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCC 19346
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || ||||| || || ||||| || ||| || | | ||||||||
Sbjct 19347 TCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCT 19406
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||||| | | | || | || | |||||||| || | || || ||
Sbjct 19407 TGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTC 19466
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||||||| || || || ||||| |||||
Sbjct 19467 TTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | |||||| ||||| | || || || ||||| |||||||||||
Sbjct 19500 CCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTG 19559
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||| || || ||||| | |||||||||||| |||
Sbjct 19560 AGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGG 19619
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||| ||||| ||||| ||| | | | | || | || | ||||| ||
Sbjct 19620 ATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACC 19679
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | ||||| || || || || || || || ||
Sbjct 19680 TCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGAC 19714
>seq1368
Length=24850
Score = 113 bits (124), Expect = 3e-20
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| |||| || | ||||||||| ||||| ||
Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| |||||||| || ||| | | ||||||||| ||||| ||| | || | |
Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 8146
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|| | |||| || ||||| || | |||||||| ||||| ||||| || || || |||
Sbjct 8145 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 8086
Query 34382 ATCTGCA 34388
|||||||
Sbjct 8085 ATCTGCA 8079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323065074043040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |