Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq926 105 1e-17 seq1525 104 5e-17 >seq926 Length=100607 Score = 105 bits (116), Expect = 1e-17 Identities = 260/397 (65%), Gaps = 18/397 (5%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||||||| || | ||| | ||||| || ||||| |||||||| || || ||||| || Sbjct 57247 CTTCCTCATATGTTGTTCTATGGTCCGCCAGGAACCGGCAAGACATCGACAATCCTCGCC 57306 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || || | || | || | || ||| || || ||||||||| |||| ||| Sbjct 57307 CTCGCGAAAGAGCTATACGGACCCGAGATGGTGAAAGCACGGGTGCTCGAGTTGAATGCT 57366 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCG 254180 || ||||| ||||| | | | || || || ||| | ||| |||| | ||| Sbjct 57367 TCCGACGAGCGCGGCATCAGCATTGTGCGGGAGAAGGTGAAGGATTTCGCGCGAATGCAA 57426 Query 254181 ATTTC-------------GTCGTTCCAACCCGGC-----TGTCCGCCTTTCAAGCTCGTG 254222 || | | | || | ||| || ||||| |||||| || | Sbjct 57427 CTTACAAACCCACCTCCGGGCTATCGAGACCGCTACCCTTGCCCGCCCTTCAAGATCATC 57486 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 ||||||||||| || || | |||||| ||||||||| ||| ||||| ||||||||| Sbjct 57487 ATCCTGGACGAAGCCGATAGCATGACACAAGACGCGCAGAGCGCGCTCCGTCGAACGATG 57546 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 ||||| | | | || ||||| ||||| | ||||||||||| | |||||| Sbjct 57547 GAGACATATAGCAAGATCACCCGTTTCTGCCTCATCTGCAACTACGTCACCCGCATCATC 57606 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | |||||| ||| ||| || |||||| || |||| Sbjct 57607 GACCCGCTCGCTAGTCGTTGTAGCAAGTTCCGCTTCA 57643 >seq1525 Length=72983 Score = 104 bits (114), Expect = 5e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || ||||| || || |||||||||||| ||||||| || ||||| | | | Sbjct 37988 TCTACGGCCCCCCCGGCACCGGGAAGACGTCAACCGTCCTGGCCCTCGCCCGGCGCATAT 38047 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 ||| ||| |||||| || || ||||||||||| ||||| || ||||| ||| | Sbjct 38048 ACGGCCAGGACAACATGCGACAGATGGTGCTCGAGCTCAACGCCTCCGACGACCGC-GCA 38106 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 | ||||| || ||||| |||||||||| ||| Sbjct 38107 TCGACGTTGTGCGCGAGCAGATCAAGACGTTC 38138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073742200325312