Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1336 286 3e-72 seq1008 132 4e-26 seq1413 109 5e-19 seq1001 96.9 3e-15 seq1368 84.2 2e-11 >seq1336 Length=25880 Score = 286 bits (316), Expect = 3e-72 Identities = 1219/1900 (64%), Gaps = 44/1900 (2%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || || || || | | ||||| | || || || || || |||||| Sbjct 4179 TCTTGATCAACCGTGAATTGAATAGGTTGAGCGGCAGCTTGTGTTCGTAGGTAGTACATG 4238 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||||||||| | ||||||| | ||| || || ||| | || || | Sbjct 4239 CCAGTCTTCAGACCAAGCTTCCACCCAGTAAAGTGCATGCTCGTGATCTTGCCCATTGTG 4298 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| ||| | | ||||| || || |||||| || || || || |||||||| Sbjct 4299 GGCTCCCTCATATGAATATTGAGTGATTGTGACTGATCAATGAAAGCACCACGATCGGCA 4358 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | ||| ||| || |||||||| || |||||||| | ||| Sbjct 4359 GCCATTTGCACTACTGTTCGCTGAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTGACT 4418 Query 22343 TCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || ||| || | | || | ||||| ||||| || | | ||||| || || Sbjct 4419 TCCGCCGGAAT-GCTAGGAATACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTCTT 4477 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACC 22459 || |||| ||| | ||| | || || ||| || | || ||| | || || Sbjct 4478 CATATTATCAGACCATAGACCTAGATCGACCAGATCCTTCAGAAGCCATG--GATTGACG 4535 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 ||||| || || |||| || || || || ||||||||| || ||| | || ||||| Sbjct 4536 ACTTGGAATTCACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAAG 4595 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 |||| || || ||||| ||||| | ||| ||||||||||| || |||| || || Sbjct 4596 CATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAGA 4655 Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGA 22636 ||| | | || || | |||| | | ||| ||||| | | ||||||||| ||| Sbjct 4656 CTGTTGCGTACACCATGTTGTTTGA---TCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGA 4712 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTG 22696 || || || || ||||| |||||| || || || | | ||| || | || | Sbjct 4713 TCAGAGGGAGTGACATT---CCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAG 4769 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA--GCTCGCCTCCAACG 22754 || ||||| || ||| | ||| | | | |||| || || | | || ||| | Sbjct 4770 CCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAATCTC-CATTGAT-GCAGTCAAAG 4827 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATT--CG-GCGGCGG-CGACGCTT 22810 || | | || || ||||| || || | |||||| | | || || ||| ||| | Sbjct 4828 CGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGA----T 4883 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 || | ||||| || | | ||| | || || | |||||| || || | ||| || Sbjct 4884 TCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATA 4943 Query 22871 GGTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGA 22928 || |||| || || | || |||||| || | |||||| || | |||| Sbjct 4944 GGGCGGTGGCGCATGTTG--CTGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGA 5001 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | |||||||| || | |||| || |||| | ||| || | Sbjct 5002 TGACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCAT 5061 Query 22989 AAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | |||| || || | || || | || || || || | ||||| || | Sbjct 5062 AGCTTTCCGAGTTATAGTCCACGAAGGACGGTAAAGCCATGGATGCCAAGTTGCAAACAG 5121 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | || || ||| | ||||||| | || || || || ||||| || || | Sbjct 5122 CAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTG 5181 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||| || |||||| ||||||||||||||| | || Sbjct 5182 TACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGT 5241 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 | || ||||| ||| | ||| | || || ||| | |||| || | | |||| Sbjct 5242 TTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAGCTTCTGGGCTTTTAT-CGTC 5300 Query 23226 GCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA- 23283 || | | || || | || ||||| | ||| | || ||||| || ||||||| Sbjct 5301 TGGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAG 5360 Query 23284 ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTC 23343 ||| ||||| || || | | | |||| ||||| || |||| | || || || Sbjct 5361 ACA-TCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTC 5419 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 ||| ||| |||| || ||||| || ||||| || || ||| || || || || || || Sbjct 5420 AACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAAC 5479 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 |||||||| ||| ||||||| || ||||| || || || || |||| |||||||| Sbjct 5480 TTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGG 5539 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 |||||||||| ||||| |||||||||| ||||| || || ||||||||||| ||||| Sbjct 5540 TTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGC 5599 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 ||||||||| | || | || ||| || |||| || || |||| ||| || || Sbjct 5600 GGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGC 5659 Query 23584 CACACTCGAACCTTTTGCTCG--AACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 | || || | || || ||| ||| || | | || || || || || Sbjct 5660 AATGTAAGAGCCCGTGGCACGGATACGATGT--ACATTCAGGCCAATTCCGCCAGCCATC 5717 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || ||||| || ||| ||| || ||||| || |||||||| || || || ||||| Sbjct 5718 TTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTC 5777 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | |||||||||| || |||||||| || | | || || | || ||||||||| Sbjct 5778 ATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTA 5837 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 ||| || || || |||||| ||||| || ||||| || |||| | | ||| Sbjct 5838 GGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCTCA 5897 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 | || ||||| ||||| | || || ||||| ||||||| |||||||||||||| Sbjct 5898 ACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGACA 5957 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 | || || || || | ||||| || || | || || || || || || || | Sbjct 5958 ATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGG 6017 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAAC 23981 ||||| ||||| || || | || ||||||| | |||||| Sbjct 6018 TAGTTGAAGTCGCGGTCATATACAATGGCCG-AGTCAAAC 6056 >seq1008 Length=41606 Score = 132 bits (146), Expect = 4e-26 Identities = 297/430 (69%), Gaps = 22/430 (5%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATT 58033 || || || ||||| ||||| |||||||| ||||| || ||||| || | || || Sbjct 1970 CTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGT-GCTTTCGCCTCTATCTT 2028 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || ||||||||||||||||| || |||||| | || ||||| Sbjct 2029 CTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCG 2088 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 ||||| |||||||| || || ||||| || ||| ||| || ||| ||| | |||| Sbjct 2089 TGACGAAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCAC-TTG---AAGAACC 2144 Query 58154 GACGCGGGATCGCA-TCTTGGA--CA-TTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 | | | | | | | || | || || ||||| ||| || || |||||| | || | Sbjct 2145 GGCCCAGCAAAGAAGTCGTAGAAGCAGTTATCGTCGATGCCGTGAGGATCGAGCAAGAAT 2204 Query 58210 TTGTCACCGAAGCCCTACC-GGTGGCCATGCTCGGTATGAA--CAATGATTTGATGTCAA 58266 | | || || || ||||| | || | ||||||||||||| ||| | | ||| Sbjct 2205 TCCTGACAGAGGCTCTACCTTGCGGTC-TGCTCGGTATGAATGCAA--ACCTCATGAAGC 2261 Query 58267 AGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCATT 58323 ||||||||||||| || ||||| | || | ||| || | | |||| ||| | Sbjct 2262 AGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTTGGGCAAT-GAGAAGGTC--T 2318 Query 58324 ACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACT 58383 || | | | || ||||| ||||| ||| | || ||||||| ||||||||||||| Sbjct 2319 ACCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACT 2378 Query 58384 TTTTCGAAAA 58393 | |||||||| Sbjct 2379 TCTTCGAAAA 2388 >seq1413 Length=23416 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||| || || |||||| | || || ||| |||| Sbjct 19270 ATGCAGATCTTCGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAATCGTCA 19211 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || |||||||||||| | || || |||||| Sbjct 19210 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 19151 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| || ||| ||||||| | ||| |||||||||| || Sbjct 19150 CAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGAACTCTGAGCGATTACAAT 19091 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || ||||| || || || || | || | |||||| Sbjct 19090 ATCCAGAAGGAGTCTACTCTCCACCTAGTGCTCCGTCTCCGTGGCGGT 19043 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || ||||| || | || || ||| | || Sbjct 19499 CATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTC 19440 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || ||| || | || ||||||||||| | || ||||| | Sbjct 19439 AGACACCATCGACAACGT-AAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATC 19381 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 | ||||| || || |||||||| || ||| |||| ||| ||| | ||||| || | Sbjct 19380 AACAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACA 19321 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| || || || || || || |||| ||| | || | || |||| Sbjct 19320 ACATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGGTA 19270 >seq1001 Length=42108 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| |||| || || Sbjct 35379 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGT 35438 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || ||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 35439 CGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 35498 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||| ||||| || ||||| ||||| ||| | || ||| Sbjct 35499 ACCAGCAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 35539 >seq1368 Length=24850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| || ||||| ||||| || || ||||| || |||||| |||| || || | |||| Sbjct 8079 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCG 8138 Query 31254 ACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| |||| | || || ||| || | | ||||||||| || | || || || | Sbjct 8139 ACACCATCGACAATGTGAA---GAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATC 8195 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||| || ||||| ||||| ||| | || ||| Sbjct 8196 AGCAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAGGAC 8233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756598711280