Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1008 114 3e-20 seq1336 104 5e-17 >seq1008 Length=41606 Score = 114 bits (126), Expect = 3e-20 Identities = 286/429 (67%), Gaps = 9/429 (2%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| || ||||| |||||||| |||||||| || ||||| ||||| || || |||||| Sbjct 1974 TTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTATCTTCTGGC 2033 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 ||||||| | ||| | |||| || || |||| ||| || ||| |||| || | |||| Sbjct 2034 TCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCGTGACG 2093 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC--CCC 102096 ||||||| || ||||||||| || | |||| | ||| || | ||| Sbjct 2094 AAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCA----CTTGAAGAACCGGCCC 2149 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | ||| |||| | | | || || || ||||| | || || |||||||| || Sbjct 2150 AGCAA-AGAAGTCGTAGAAGCAGTTATCGTCGATGCCGTGAGGATCGAGCAAGAATTCCT 2208 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGC-AAGTTGATGAGCCAGTACA 102215 |||| | || ||| | | || ||||| ||| || | |||| ||||||| Sbjct 2209 GACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAA-TGCAAACCTCATGAAGCAGTACA 2267 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||| || ||||| ||| || | || | |||| || ||| ||| || Sbjct 2268 TTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTTGGGCAATGAGAAGGTCTACCGCTCTA 2327 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 ||||||| ||| |||||||| || ||||| |||| ||||| ||||| || |||| Sbjct 2328 CCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAA 2387 Query 102336 AGAGAGTCG 102344 || | |||| Sbjct 2388 AGCGCGTCG 2396 >seq1336 Length=25880 Score = 104 bits (114), Expect = 5e-17 Identities = 180/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844 ||| | ||| ||||| ||||||| || || || ||||| || |||||||| || Sbjct 5699 GCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCC 5758 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTG 94903 |||||| |||||||||| | | | | | |||||| || || | || || || | | Sbjct 5759 CTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGG-G 5817 Query 94904 TTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCAT 94963 ||||| ||| |||||||| |||||||||||||| || || | |||||||| | | Sbjct 5818 TTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGT 5877 Query 94964 ATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 | || || | ||| | | || ||| ||| || || ||||||||||| |||| Sbjct 5878 AGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCA 5937 Query 95024 TGTCCTGAGGGCGCTCAAC 95042 ||| |||||| | ||| || Sbjct 5938 TGTGCTGAGGTCTCTCGAC 5956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989561697559845