Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1336 228 1e-54 >seq1336 Length=25880 Score = 228 bits (252), Expect = 1e-54 Identities = 481/711 (68%), Gaps = 6/711 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| ||||| || || | |||| | | | | || ||| || | ||| ||||||| | Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| |||| | || ||||||||||| || ||||||||||||||||| |||| || Sbjct 5402 CCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAA 5461 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || || | | | | |||||| || || |||||| ||||| |||||| | | Sbjct 5462 GAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAA 5521 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| || ||||||||||| | ||| || || | | | || || ||||| || || || Sbjct 5522 TACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACC 5581 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||| | ||| | |||||||| || | || | ||||| || | || || || || Sbjct 5582 TTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGA 5641 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA-CTA-ATTGATAGA 63545 | ||||||||||||| || || || ||||||| ||| | || ||| || Sbjct 5642 CGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAGG 5699 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCC 63604 || ||||| || ||||| || || || | || ||| ||||||| |||||||| ||||| Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGCC 5758 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || || |||||||| |||||| | | || ||| |||||| || | | | || Sbjct 5759 CTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGT 5818 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 ||| ||||| || | ||||| ||||| || || || |||| || | || ||||| Sbjct 5819 TCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTA 5878 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 ||||| | || || | ||| | ||| ||||| || |||||||| | ||| Sbjct 5879 GGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCAT 5938 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 |||||||||||| || ||||| || || || |||| | || ||| |||| ||| Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63895 || || || || || | ||| ||||| || || || | ||| |||| Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGA 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803751885520