Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1336 228 1e-54 >seq1336 Length=25880 Score = 228 bits (252), Expect = 1e-54 Identities = 482/713 (68%), Gaps = 6/713 (1%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| ||||| || || | |||| | | | |||| ||| || | ||| ||||||| | Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| |||| | || ||||||||||| || ||||||||||||||||| |||| || Sbjct 5402 CCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAA 5461 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | || | | | | |||||| || || |||||| ||||| |||||| | | Sbjct 5462 GAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAA 5521 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| | ||||||||||| | ||| || || | | | || || ||||| || || || Sbjct 5522 TACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACC 5581 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | ||| | |||||||| || | || | ||||| || | || ||||| || Sbjct 5582 TTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGA 5641 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA-CTA-ATTGATAGA 66338 || |||||||| |||| || || || | ||||| ||| | || ||| || Sbjct 5642 CGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAGG 5699 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCC 66397 || ||||| || ||||| || || || | || ||| ||||||| || ||||| ||||| Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGCC 5758 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 ||| ||||||||||| |||||| | | || ||| |||||| || | | || Sbjct 5759 CTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGT 5818 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 ||| ||||| || | ||||| ||||| || || || |||| || | || ||||| Sbjct 5819 TCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTA 5878 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 ||||| | || || | ||| | ||| ||||| || |||||||| | ||| Sbjct 5879 GGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCAT 5938 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||||||||| || || ||||| || || |||| | || ||| |||| ||| Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690 || || || || || | ||| ||||| || || || | ||| |||||| Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 6051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158328425560