Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 107 2e-18
seq1001 87.8 2e-12
seq1008 82.4 8e-11
>seq1413
Length=23416
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || ||||| | || ||||| | ||||||||| || |||||||| || |||||
Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||| || ||||| |||||||| |||| || || || |||||||||||
Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || |||| | || | ||||| | | || ||
Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACT 19451
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | |||||| ||||| | || || ||||| ||||||||
Sbjct 19452 TCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
>seq1001
Length=42108
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||| |||||||| || || || |||||||||||||||| ||||| || ||||| || ||
Sbjct 35539 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTT 35480
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | |||||| | | ||||||||| | ||| |
Sbjct 35479 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGAT 35420
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| || | || || ||||| || |||||
Sbjct 35419 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384
>seq1008
Length=41606
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 52561 CGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAA 52620
||||| |||| ||| ||||| | || ||||| | | ||| | ||||||||| ||
Sbjct 1907 CGCAAGAAGGCTGACTGGGCTCTAAAGTGGATTGCTGATCGCAATTCGACTTTTGCCCAA 1966
Query 52621 CGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATA 52680
|||||| | || || ||| || |||||| | || || ||| ||| || | ||
Sbjct 1967 CGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTATC 2026
Query 52681 TTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATC 52739
|| | |||| || | ||| | | ||||||||||| || || |||||| | || ||
Sbjct 2027 TTCTGGCTCAAGAAGCGTGGTC-TGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTC 2085
Query 52740 GCGCGACGAAGGAATGCACACAGATTTTGCGTGT 52773
||| |||||||| | ||||| || ||||| |||
Sbjct 2086 GCGTGACGAAGGTCTCCACACCGACTTTGCCTGT 2119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496053092792800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |