Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 266 5e-66
>seq1336
Length=25880
Score = 266 bits (294), Expect = 5e-66
Identities = 1202/1877 (64%), Gaps = 41/1877 (2%)
Strand=Plus/Plus
Query 78718 GTGAATTGAATGGG---AGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 78774
||||||||||| || ||||| || || || ||||| |||||||| || || ||
Sbjct 4191 GTGAATTGAATAGGTTGAGCGGCAGCTTGT---GTTCGTAGGTAGTACATGCCAGTCTTC 4247
Query 78775 AGACCGAGACTCCATCC-GTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC 78833
||||| || |||| || ||| || ||||| ||||| | ||| | || ||
Sbjct 4248 AGACCAAGCTTCCACCCAGTA-AAGTGCATGCTCGTGATCTTGCCCATTGTGGGCTCCCT 4306
Query 78834 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 78893
||||| ||||| | ||||| ||||| ||||| || || | || ||||||||||
Sbjct 4307 CATATGAATATTGAGTGATTGTGACTGATCAATGAAAGCACCACGATCGGCAGCCATTTG 4366
Query 78894 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953
| | || || | ||||||||| | ||| || || | || | || | ||
Sbjct 4367 CACTACTGTTCGCTGAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTGACTTCCGCCGG 4426
Query 78954 AAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTC 79010
|| | | | || |||||| ||| ||||| || || || || | ||||| || | ||
Sbjct 4427 AATGCTAGGAATACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTCTTCATATTATC 4486
Query 79011 ATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTC 79070
| ||||| | ||| | | | | || || ||||| || ||||| |||||
Sbjct 4487 AGACCATAGACCTAGATCGACCAGATCCTTCAGAAGCCATGGATTGACGACTTGGAATTC 4546
Query 79071 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATT 79130
|| | || || | |||| |||||| || || || || || | |||| |||||
Sbjct 4547 ACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATT 4606
Query 79131 TCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190
|||| ||| || | || || || ||||| || |||| | | ||| || | |
Sbjct 4607 GCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTAC 4666
Query 79191 ACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAAC 79250
||| | | | |||| | || || || | |||| |||||||||||||| || ||
Sbjct 4667 ACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGATCAGAGGGAGTGAC 4726
Query 79251 ATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATA 79310
|||||| | ||||| || ||||| || | | | | || || ||| || ||
Sbjct 4727 ATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTA 4786
Query 79311 AGGTCCTTCCTTTTCGGCTAATTCACAACTC--GCCTCTAATGCTCCGTAATAAATGGTT 79368
|| ||||| | | || | || | | | || || || | | || |||||
Sbjct 4787 AGTACCTTCTTCCTTAGCAA--TCTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTC 4844
Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427
|| ||||||| ||| ||||| | | | ||||| ||| || |||| || | ||||
Sbjct 4845 TCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCG-GGCGATTCAAAAGGC-ATGCGGAGAG 4902
Query 79428 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486
|| || | || |||| || || ||||| | ||| ||||| | || | | | || |
Sbjct 4903 CAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTT-G 4961
Query 79487 AAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545
|| | || || || | |||||| | || || || | | | || ||||| |
Sbjct 4962 CTGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGC 5021
Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA----TCTATTAC 79601
|| | |||| | || || | || || |||||||| | | | | | || | |
Sbjct 5022 ACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCATAGCTTTCCGAGTTATAGTCC 5081
Query 79602 A---AACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658
| | | | | || || | ||||||| || ||||| || || |||| | | |
Sbjct 5082 ACGAAGGACGGTAAA-GCCATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACT 5140
Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718
|| | || || ||||||||||| ||| || ||| || || | || | || ||
Sbjct 5141 GTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTT 5200
Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
||||| || ||||| || || ||||| || | ||||| || ||||||
Sbjct 5201 GCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGC 5260
Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCT-CTTTTCTC 79837
|||| ||| || | ||||| | || | |||| ||| | || | | | |||
Sbjct 5261 CTCTAGAATGGCATACCAGA-GCTTCTGGGCTTT--TATCGTCTGGCGGCCGCGACCCTC 5317
Query 79838 T--TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895
||| || | || | ||| ||||| || || | |||||| | | ||||
Sbjct 5318 AGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGC 5377
Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955
||| |||| || ||||||| | ||| || | | || ||||||||||| || ||
Sbjct 5378 ACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAG 5437
Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015
||||||||||||||| |||| || || || | | | | ||||| || || ||
Sbjct 5438 ATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTT 5497
Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075
|||| ||||| |||||| | | | ||| || ||||||||||| | ||| || || |
Sbjct 5498 CTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAA 5557
Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135
| | ||||||||||| || || || ||||| | ||| | |||||||| || | || |
Sbjct 5558 AGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCG 5617
Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195
||||| || | || ||||| || || |||||||| |||| || || || ||||
Sbjct 5618 TAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGC 5677
Query 80196 ACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||| ||| | || ||| || || ||||| || ||||| || || || | || |||
Sbjct 5678 ACGGATACGATGTACATT--CAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT 5735
Query 80254 CGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312
||||||| || ||||| |||||||| || |||||||| |||||| | | || ||
Sbjct 5736 -GTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCA 5794
Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372
| |||||| || | | ||||| ||||| || | ||||| ||||| || || ||
Sbjct 5795 GGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAA 5854
Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432
|||| |||| || ||||| ||||| | || || | ||| | |||
Sbjct 5855 GTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAAT 5914
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492
|||||||| |||||||| | ||||||||||||||| || || ||||| ||| || ||
Sbjct 5915 ACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTT 5974
Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552
|| | || ||| |||| ||| || || || || || | ||| ||||| || ||
Sbjct 5975 CAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTC 6034
Query 80553 GTAAATAATAACCGAGT 80569
|| | ||| ||||||
Sbjct 6035 ATATACAATGGCCGAGT 6051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718253007064760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |