Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1336 266 5e-66 >seq1336 Length=25880 Score = 266 bits (294), Expect = 5e-66 Identities = 1202/1877 (64%), Gaps = 41/1877 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGG---AGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTT 78774 ||||||||||| || ||||| || || || ||||| |||||||| || || || Sbjct 4191 GTGAATTGAATAGGTTGAGCGGCAGCTTGT---GTTCGTAGGTAGTACATGCCAGTCTTC 4247 Query 78775 AGACCGAGACTCCATCC-GTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC 78833 ||||| || |||| || ||| || ||||| ||||| | ||| | || || Sbjct 4248 AGACCAAGCTTCCACCCAGTA-AAGTGCATGCTCGTGATCTTGCCCATTGTGGGCTCCCT 4306 Query 78834 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 78893 ||||| ||||| | ||||| ||||| ||||| || || | || |||||||||| Sbjct 4307 CATATGAATATTGAGTGATTGTGACTGATCAATGAAAGCACCACGATCGGCAGCCATTTG 4366 Query 78894 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | | || || | ||||||||| | ||| || || | || | || | || Sbjct 4367 CACTACTGTTCGCTGAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTGACTTCCGCCGG 4426 Query 78954 AAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTC 79010 || | | | || |||||| ||| ||||| || || || || | ||||| || | || Sbjct 4427 AATGCTAGGAATACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTCTTCATATTATC 4486 Query 79011 ATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTC 79070 | ||||| | ||| | | | | || || ||||| || ||||| ||||| Sbjct 4487 AGACCATAGACCTAGATCGACCAGATCCTTCAGAAGCCATGGATTGACGACTTGGAATTC 4546 Query 79071 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATT 79130 || | || || | |||| |||||| || || || || || | |||| ||||| Sbjct 4547 ACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATT 4606 Query 79131 TCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190 |||| ||| || | || || || ||||| || |||| | | ||| || | | Sbjct 4607 GCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTAC 4666 Query 79191 ACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAAC 79250 ||| | | | |||| | || || || | |||| |||||||||||||| || || Sbjct 4667 ACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGATCAGAGGGAGTGAC 4726 Query 79251 ATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATA 79310 |||||| | ||||| || ||||| || | | | | || || ||| || || Sbjct 4727 ATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTA 4786 Query 79311 AGGTCCTTCCTTTTCGGCTAATTCACAACTC--GCCTCTAATGCTCCGTAATAAATGGTT 79368 || ||||| | | || | || | | | || || || | | || ||||| Sbjct 4787 AGTACCTTCTTCCTTAGCAA--TCTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTC 4844 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427 || ||||||| ||| ||||| | | | ||||| ||| || |||| || | |||| Sbjct 4845 TCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCG-GGCGATTCAAAAGGC-ATGCGGAGAG 4902 Query 79428 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486 || || | || |||| || || ||||| | ||| ||||| | || | | | || | Sbjct 4903 CAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTT-G 4961 Query 79487 AAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 || | || || || | |||||| | || || || | | | || ||||| | Sbjct 4962 CTGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGC 5021 Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA----TCTATTAC 79601 || | |||| | || || | || || |||||||| | | | | | || | | Sbjct 5022 ACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCATAGCTTTCCGAGTTATAGTCC 5081 Query 79602 A---AACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 | | | | | || || | ||||||| || ||||| || || |||| | | | Sbjct 5082 ACGAAGGACGGTAAA-GCCATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACT 5140 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | || || ||||||||||| ||| || ||| || || | || | || || Sbjct 5141 GTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTT 5200 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||||| || ||||| || || ||||| || | ||||| || |||||| Sbjct 5201 GCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGC 5260 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCT-CTTTTCTC 79837 |||| ||| || | ||||| | || | |||| ||| | || | | | ||| Sbjct 5261 CTCTAGAATGGCATACCAGA-GCTTCTGGGCTTT--TATCGTCTGGCGGCCGCGACCCTC 5317 Query 79838 T--TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895 ||| || | || | ||| ||||| || || | |||||| | | |||| Sbjct 5318 AGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGC 5377 Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955 ||| |||| || ||||||| | ||| || | | || ||||||||||| || || Sbjct 5378 ACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAG 5437 Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015 ||||||||||||||| |||| || || || | | | | ||||| || || || Sbjct 5438 ATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTT 5497 Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075 |||| ||||| |||||| | | | ||| || ||||||||||| | ||| || || | Sbjct 5498 CTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAA 5557 Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135 | | ||||||||||| || || || ||||| | ||| | |||||||| || | || | Sbjct 5558 AGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCG 5617 Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 ||||| || | || ||||| || || |||||||| |||| || || || |||| Sbjct 5618 TAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGC 5677 Query 80196 ACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||| ||| | || ||| || || ||||| || ||||| || || || | || ||| Sbjct 5678 ACGGATACGATGTACATT--CAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT 5735 Query 80254 CGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 ||||||| || ||||| |||||||| || |||||||| |||||| | | || || Sbjct 5736 -GTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCA 5794 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 | |||||| || | | ||||| ||||| || | ||||| ||||| || || || Sbjct 5795 GGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAA 5854 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 |||| |||| || ||||| ||||| | || || | ||| | ||| Sbjct 5855 GTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAAT 5914 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 |||||||| |||||||| | ||||||||||||||| || || ||||| ||| || || Sbjct 5915 ACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTT 5974 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552 || | || ||| |||| ||| || || || || || | ||| ||||| || || Sbjct 5975 CAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTC 6034 Query 80553 GTAAATAATAACCGAGT 80569 || | ||| |||||| Sbjct 6035 ATATACAATGGCCGAGT 6051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253007064760