Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 237 2e-57
>seq1336
Length=25880
Score = 237 bits (262), Expect = 2e-57
Identities = 484/712 (68%), Gaps = 8/712 (1%)
Strand=Plus/Plus
Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002
||| ||||| || || | ||| | | | |||| ||| || ||||| ||||||| ||
Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401
Query 72003 CCA-CTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061
||| || | || || | ||||||||||| || ||||||||||||||||| |||| |
Sbjct 5402 CCAGCTGCCGTTCTTC-TCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGA 5460
Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121
| || || | | | | ||||| || || |||||| ||||| |||||| | |
Sbjct 5461 AGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAA 5520
Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181
| ||| || ||||||||||| | ||| || || | | | ||||| ||||| || || |
Sbjct 5521 ATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCAC 5580
Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241
| ||||| | ||| | |||||||| || | || | ||||| || | || ||||| |
Sbjct 5581 CTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCG 5640
Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTAATTGATAG 72299
| | |||||||| |||| || || || ||||||| ||| || ||| ||
Sbjct 5641 ACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAG 5698
Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGC 72358
|| ||||| || ||||| || || || | || ||| ||||||| || ||||| ||||
Sbjct 5699 GCCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGC 5757
Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418
|||| ||||||||||| |||||| | | || ||| |||||| || | | |
Sbjct 5758 CCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGG 5817
Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478
|||| ||||| || | ||||| ||||| || || || |||| |||| || ||||
Sbjct 5818 TTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGT 5877
Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538
| ||||| | || || | ||| | || |||||||| |||||||| | ||
Sbjct 5878 AGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCA 5937
Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598
| ||||||||||| || || ||||| ||| || |||| | || ||| |||| ||
Sbjct 5938 TGTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAG 5997
Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 72650
| || || || || || | ||| ||||| || || || | ||| ||||
Sbjct 5998 TCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGA 6049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671124443326840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |