Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1336 237 2e-57 >seq1336 Length=25880 Score = 237 bits (262), Expect = 2e-57 Identities = 484/712 (68%), Gaps = 8/712 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| ||||| || || | ||| | | | |||| ||| || ||||| ||||||| || Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401 Query 72003 CCA-CTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 ||| || | || || | ||||||||||| || ||||||||||||||||| |||| | Sbjct 5402 CCAGCTGCCGTTCTTC-TCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGA 5460 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | || || | | | | ||||| || || |||||| ||||| |||||| | | Sbjct 5461 AGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAA 5520 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||| || ||||||||||| | ||| || || | | | ||||| ||||| || || | Sbjct 5521 ATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCAC 5580 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 | ||||| | ||| | |||||||| || | || | ||||| || | || ||||| | Sbjct 5581 CTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCG 5640 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTAATTGATAG 72299 | | |||||||| |||| || || || ||||||| ||| || ||| || Sbjct 5641 ACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAG 5698 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGC 72358 || ||||| || ||||| || || || | || ||| ||||||| || ||||| |||| Sbjct 5699 GCCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGC 5757 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| ||||||||||| |||||| | | || ||| |||||| || | | | Sbjct 5758 CCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGG 5817 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| ||||| || | ||||| ||||| || || || |||| |||| || |||| Sbjct 5818 TTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGT 5877 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | ||||| | || || | ||| | || |||||||| |||||||| | || Sbjct 5878 AGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCA 5937 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||||||||| || || ||||| ||| || |||| | || ||| |||| || Sbjct 5938 TGTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAG 5997 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 72650 | || || || || || | ||| ||||| || || || | ||| |||| Sbjct 5998 TCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGA 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124443326840