Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1008 161 1e-34
>seq1008
Length=41606
Score = 161 bits (178), Expect = 1e-34
Identities = 213/290 (73%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| || || |||| ||||| ||||| | || ||| ||||||||
Sbjct 1507 ATCTGGCAAATGTACAAGAAAGCCGAGGCATCCTTCTGGACTGCAGAGGAGATCGATCTG 1566
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||||| |||| ||| | | || | | ||| ||| | | || || ||
Sbjct 1567 TCCAAGGACCTCCACGACTGGAACAACCGAATCAACGAAGACGAGAAATACTTCATTTCC 1626
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197
||||| |||||||||||||||| ||| || || ||||||||||| |||| |||||| ||
Sbjct 1627 CACATCTTGGCCTTCTTTGCCGCCTCGGACGGTATCGTCAACGAGAATCTTGTTGA-GCG 1685
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256
||| | ||| | ||||| || | ||| ||||| ||||| ||||| |||||||
Sbjct 1686 TTTCAGTGGCGAGGTTCAGATTCCCGAAG-CTCGATGCTTCTACGGTTTCCAGATCATGA 1744
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306
| |||||| | ||||| || | |||||| || ||||||| || |||
Sbjct 1745 TGGAGAACATCCACTCCGAGACATACTCTCTGCTCATTGACACCTATATT 1794
Score = 131 bits (144), Expect = 2e-25
Identities = 333/500 (67%), Gaps = 19/500 (4%)
Strand=Plus/Plus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || |||||| | |||| | |||||| | ||| ||| || | | |||
Sbjct 1904 ATTCGCAAGAAGGCTGACTGGGCTCTAAAGTGGATTGCTGATCGCAATTCGACTTTTGCC 1963
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | ||| | || ||||| ||||| || || |||||||| ||| ||| || |
Sbjct 1964 CAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCT 2023
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| |||||||||||||| || || |||||||| ||||| | ||||||| | ||
Sbjct 2024 ATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATC 2083
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600
|| || ||||| || || ||| ||||||||| |||| ||||| | ||| ||
Sbjct 2084 TCGCGTGACGAAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCACT---TG--- 2137
Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACA-TTGTAACCGATGCCGTGAGGAT 125659
|| | | ||||| | ||| || | | || || | |||||||||||||||
Sbjct 2138 ---AAGAACCGGCCCAGCAAAGAAGTCGT-AGAAGCAGTTATCGTCGATGCCGTGAGGAT 2193
Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC-AAGC 125718
|| ||||| || || || || | ||||| | | || | || ||||| ||| || |
Sbjct 2194 CGAGCAAGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAA-TGCAAACC 2252
Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---C 125775
| ||| ||||||| ||||| ||||| |||||||| || || ||| |||
Sbjct 2253 TCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTTG---GGCAATG 2309
Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835
||| | ||| | | | || || || ||||||||| | ||| || || | || |
Sbjct 2310 AGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCA 2369
Query 125836 AGACCAACTTTTTCGAGAAG 125855
|||| ||||| ||||| |||
Sbjct 2370 AGACAAACTTCTTCGAAAAG 2389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741042905960840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |