Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1008 161 1e-34 >seq1008 Length=41606 Score = 161 bits (178), Expect = 1e-34 Identities = 213/290 (73%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| || || |||| ||||| ||||| | || ||| |||||||| Sbjct 1507 ATCTGGCAAATGTACAAGAAAGCCGAGGCATCCTTCTGGACTGCAGAGGAGATCGATCTG 1566 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || | | ||| ||| | | || || || Sbjct 1567 TCCAAGGACCTCCACGACTGGAACAACCGAATCAACGAAGACGAGAAATACTTCATTTCC 1626 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||||| |||||||||||||||| ||| || || ||||||||||| |||| |||||| || Sbjct 1627 CACATCTTGGCCTTCTTTGCCGCCTCGGACGGTATCGTCAACGAGAATCTTGTTGA-GCG 1685 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| | ||| | ||||| || | ||| ||||| ||||| ||||| ||||||| Sbjct 1686 TTTCAGTGGCGAGGTTCAGATTCCCGAAG-CTCGATGCTTCTACGGTTTCCAGATCATGA 1744 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 | |||||| | ||||| || | |||||| || ||||||| || ||| Sbjct 1745 TGGAGAACATCCACTCCGAGACATACTCTCTGCTCATTGACACCTATATT 1794 Score = 131 bits (144), Expect = 2e-25 Identities = 333/500 (67%), Gaps = 19/500 (4%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || |||||| | |||| | |||||| | ||| ||| || | | ||| Sbjct 1904 ATTCGCAAGAAGGCTGACTGGGCTCTAAAGTGGATTGCTGATCGCAATTCGACTTTTGCC 1963 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||| | || ||||| ||||| || || |||||||| ||| ||| || | Sbjct 1964 CAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCT 2023 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || || |||||||| ||||| | ||||||| | || Sbjct 2024 ATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATC 2083 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 || || ||||| || || ||| ||||||||| |||| ||||| | ||| || Sbjct 2084 TCGCGTGACGAAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCACT---TG--- 2137 Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACA-TTGTAACCGATGCCGTGAGGAT 125659 || | | ||||| | ||| || | | || || | ||||||||||||||| Sbjct 2138 ---AAGAACCGGCCCAGCAAAGAAGTCGT-AGAAGCAGTTATCGTCGATGCCGTGAGGAT 2193 Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC-AAGC 125718 || ||||| || || || || | ||||| | | || | || ||||| ||| || | Sbjct 2194 CGAGCAAGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAA-TGCAAACC 2252 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---C 125775 | ||| ||||||| ||||| ||||| |||||||| || || ||| ||| Sbjct 2253 TCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTTG---GGCAATG 2309 Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||| | | | || || || ||||||||| | ||| || || | || | Sbjct 2310 AGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCA 2369 Query 125836 AGACCAACTTTTTCGAGAAG 125855 |||| ||||| ||||| ||| Sbjct 2370 AGACAAACTTCTTCGAAAAG 2389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042905960840