Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 111 4e-19
seq1008 91.5 3e-13
>seq1413
Length=23416
Score = 111 bits (122), Expect = 4e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| ||||| || | ||||| || ||||| ||||| || || ||||||| ||| |||
Sbjct 19059 AGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCT 19118
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || ||||| || || || | ||| || || ||||| || ||||| || |||
Sbjct 19119 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 19178
Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||| ||||| || || || || | |||||| | ||| || || | || || ||
Sbjct 19179 TGAATC-TTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGT 19237
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || | ||| || || || ||||||||
Sbjct 19238 CTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270
Score = 102 bits (112), Expect = 2e-16
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || |||||||| | || | || ||||| ||||| |||||||| |||
Sbjct 19819 TCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAA 19878
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | || || || ||||| || || || || ||||||||||| | || |||||
Sbjct 19879 ATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 19938
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || || ||||| | || || ||||| ||||| || || || ||
Sbjct 19939 TCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACG 19998
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 19999 AAGATCTGCAT 20009
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || |||||| || |||| ||||| || || || ||||| ||||||
Sbjct 19536 TCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAA 19595
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | ||| || || || || || || ||||| ||||||||||| | || || ||
Sbjct 19596 ATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTG 19655
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547
|| | || || || ||| ||||| ||||| || ||||| ||||| || || || ||
Sbjct 19656 TCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGAC 19714
>seq1008
Length=41606
Score = 91.5 bits (100), Expect = 3e-13
Identities = 310/476 (65%), Gaps = 19/476 (4%)
Strand=Plus/Plus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
||||||| || || || |||||||| ||||| || |||| ||| ||||||| |||
Sbjct 1974 TTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTATCTTCTGGC 2033
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
| ||||| | || || ||||| || | || ||||||||||| | || | ||||
Sbjct 2034 TCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCGTGACG 2093
Query 269259 AAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTT 269318
||||| | ||| |||||| || ||| |||| ||| | | ||| | ||||
Sbjct 2094 AAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCA----CTT---GAAGAACCGG 2146
Query 269319 CTCAAGATAGA----GTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTT 269374
| || | ||| ||| | | | |||| | || || | || ||||||
Sbjct 2147 CCCAGCAAAGAAGTCGTAGAAGCAGTTATCGTCGATGCCGTGAGGATCGAGCAAGAATTC 2206
Query 269375 CTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATC-GATGATAGAATA 269433
|| || || |||||| || || ||| ||||||||||| ||||| | |||| | ||
Sbjct 2207 CTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAAT-GCAAACCTCATGAAGCAGTA 2265
Query 269434 TATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGT 269493
||| ||||||| | ||| | |||| || |||| || | | || | || ||
Sbjct 2266 CATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTT--GGGCAATGAGAAGGTCTACCGC 2323
Query 269494 TGAA--AATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
| | || ||||| ||| |||||||| || || | | || ||| | || ||||||
Sbjct 2324 TCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTC 2383
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTA--AAGAAGAA 269605
|| ||||| || || | || ||||| ||||| ||| | | | ||||||||
Sbjct 2384 GAAAAGCGCGTCGGTGATTACCAGAAGGCCGGTGTTATGGCCAGCACCAAGAAGAA 2439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151372450718372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |