Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1413 111 4e-19 seq1008 91.5 3e-13 >seq1413 Length=23416 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | ||||| || ||||| ||||| || || ||||||| ||| ||| Sbjct 19059 AGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCT 19118 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| || || ||||| || ||||| || ||| Sbjct 19119 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 19178 Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||||| || || || || | |||||| | ||| || || | || || || Sbjct 19179 TGAATC-TTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGT 19237 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | ||| || || || |||||||| Sbjct 19238 CTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || |||||||| | || | || ||||| ||||| |||||||| ||| Sbjct 19819 TCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAA 19878 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | || || || ||||| || || || || ||||||||||| | || ||||| Sbjct 19879 ATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 19938 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| | || || ||||| ||||| || || || || Sbjct 19939 TCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACG 19998 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 19999 AAGATCTGCAT 20009 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || |||||| || |||| ||||| || || || ||||| |||||| Sbjct 19536 TCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAA 19595 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| || || || || || || ||||| ||||||||||| | || || || Sbjct 19596 ATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTG 19655 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || || || ||| ||||| ||||| || ||||| ||||| || || || || Sbjct 19656 TCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGAC 19714 >seq1008 Length=41606 Score = 91.5 bits (100), Expect = 3e-13 Identities = 310/476 (65%), Gaps = 19/476 (4%) Strand=Plus/Plus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 ||||||| || || || |||||||| ||||| || |||| ||| ||||||| ||| Sbjct 1974 TTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTATCTTCTGGC 2033 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 | ||||| | || || ||||| || | || ||||||||||| | || | |||| Sbjct 2034 TCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCGTGACG 2093 Query 269259 AAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTT 269318 ||||| | ||| |||||| || ||| |||| ||| | | ||| | |||| Sbjct 2094 AAGGTCTCCACACCGACTTTGCCTGTCTATTGTTTTCCCA----CTT---GAAGAACCGG 2146 Query 269319 CTCAAGATAGA----GTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTT 269374 | || | ||| ||| | | | |||| | || || | || |||||| Sbjct 2147 CCCAGCAAAGAAGTCGTAGAAGCAGTTATCGTCGATGCCGTGAGGATCGAGCAAGAATTC 2206 Query 269375 CTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATC-GATGATAGAATA 269433 || || || |||||| || || ||| ||||||||||| ||||| | |||| | || Sbjct 2207 CTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAAT-GCAAACCTCATGAAGCAGTA 2265 Query 269434 TATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGT 269493 ||| ||||||| | ||| | |||| || |||| || | | || | || || Sbjct 2266 CATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTT--GGGCAATGAGAAGGTCTACCGC 2323 Query 269494 TGAA--AATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 | | || ||||| ||| |||||||| || || | | || ||| | || |||||| Sbjct 2324 TCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTC 2383 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTA--AAGAAGAA 269605 || ||||| || || | || ||||| ||||| ||| | | | |||||||| Sbjct 2384 GAAAAGCGCGTCGGTGATTACCAGAAGGCCGGTGTTATGGCCAGCACCAAGAAGAA 2439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372450718372