Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1413 91.5 1e-13 seq1001 82.4 6e-11 >seq1413 Length=23416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || |||||||| |||| ||| || | || ||||| ||| Sbjct 19807 TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGC 19866 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| || || ||||| || || | | ||||||||| ||| || Sbjct 19867 TTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTG 19926 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | ||||||| ||| | || ||||| || || ||| Sbjct 19927 GACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTG 19986 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 19987 AGAGTCTTAACGAAGATCTGCAT 20009 >seq1001 Length=42108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || |||||||| || | | || ||||||| |||||| Sbjct 35586 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGC 35527 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||| ||||| || || | | ||||||||| || || Sbjct 35526 TTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 35467 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| ||| | |||||| ||||| || || || || || ||| Sbjct 35466 GACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTG 35407 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 35406 AGGGTCTTGACGAAGATCTGCAT 35384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242169295759