Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1413 109 5e-19 >seq1413 Length=23416 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || ||||| |||| ||| | ||| ||||| || | ||| || || | Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||| || ||||| | || || |||| |||||| |||||||| Sbjct 19843 AAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGG 19902 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| || | |||||| | ||| |||||| | || || Sbjct 19903 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACC 19962 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||||| || ||||| ||||| || || |||||||||||| Sbjct 19963 TCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATG 20010 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| || | ||||||||| | ||||| ||||| || | ||| || ||||| Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||||||| || || | ||||| | || || ||||| ||||| Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || ||| ||| | ||| ||||| | ||||| Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACT 19451 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || || || ||||| || || || || || ||||| ||||||| Sbjct 19452 TCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATGC 19500 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||| | ||| | |||||| ||||| || | || |||||||||| ||| | || ||| Sbjct 19061 CACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGT--TCGACCATCT 19118 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || | ||||| | | ||||| ||||||||||||||||| ||||| Sbjct 19119 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 19178 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||| ||| | | | || || | || || || | |||||||| Sbjct 19179 TGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTC 19238 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || || || ||||||||||| Sbjct 19239 TTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281343197240