Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1336 428 1e-114 >seq1336 Length=25880 Score = 428 bits (474), Expect = 1e-114 Identities = 1091/1635 (67%), Gaps = 44/1635 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | || ||| ||| |||||||||||| | | || ||||||||||| Sbjct 5854 TTCACCCATGCTTCCCCTACACTGTTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCC 5795 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | | ||||| || ||| || ||||| || | |||||| ||||| | Sbjct 5794 TGCTTCTTGGTCGACATGAAAGATGATAGTATTGAGGGCATTTATGACACCCTTAAAACA 5735 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 |||||| | |||||||||| || ||||||||||| || || | || | | |||| Sbjct 5734 TGTGCTATGATTTCCAAGATGGCTGGCGGAATTGGCCTGAATGTA--CATCGTATCCGTG 5677 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | | | ||||||| ||| || || |||||||| | || |||||| | | Sbjct 5676 CCACGGGCTCTTACATTGCCGGTACCAATGGCACGTCGAATGGCATCGTCCCCATGTTAC 5617 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| || || | |||||||| || ||||| || || || || | Sbjct 5616 GCGTCTTCAACAACACCGCCCGCTACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTT 5557 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 ||||||| || ||||| || || | ||| | |||||||| || || || || || | Sbjct 5556 TTGCTATTTACCTCGAACCGTGGCACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGA 5497 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || ||||||||| | ||||| ||||| || ||| || |||||| || |||| | Sbjct 5496 ACCACGGTAAAGAGGAAGTTCGTGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATC 5437 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 || ||||| || || ||| | | | | | ||| |||| | ||||| |||| || Sbjct 5436 TGTTCATGAAACGAGTTGAG--AAGAACGGCAGCTGGACACTGATGTGCCCGAACGAGTG 5379 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 | | |||||| ||||||| | ||||| || | || || || ||||| ||||||||| | Sbjct 5378 TGCTGGTCTTGCCGATGTCTACGGTGATGAGTTTGAAGCCCTCTACGAGAAGTATGAAGC 5319 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| | || |||| || || |||||||| |||| |||||| | || | Sbjct 5318 TGAGGGTCGCGGCCGCCAGACGATAAAAGCCCAGAAGCTCTGGTATGCCATTCTAGAGGC 5259 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| |||| |||| ||| | ||||| || ||| |||||| ||| Sbjct 5258 TCAGACAGAGACTGGAAACCCCTTCATGCTCTACAAGGACCACGCCAATCGCAAGAGCAA 5199 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||| |||||||||| | || | || || || || ||||| ||||| |||| Sbjct 5198 CCAGAAGAACCTGGGTACAATTC-GTAGTTCTAATCTCTGCACTGAGATCATTGAGTACA 5140 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA 364321 ||||| || || ||| || || ||| | || || || || | ||| | || || Sbjct 5139 GTGCTCCAGATGAAGTTGCTGTTTGCAACTTGGCATCCATGGCTTTACCGTCCTTCGTGG 5080 Query 364322 AAGAT------GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTT 364375 | || | | | ||| || | || | || |||||| | || | Sbjct 5079 ACTATAACTCGGAAAGCTATGATTTTCAAAAGCTGCACGAGGTAACCCAAGTTGTTGTGC 5020 Query 364376 GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCG 364430 ||||||| ||| || |||||| || | ||||| | ||||| || || ||| Sbjct 5019 GCAATCTGAACAGAGTCATCGACGCAAACCACTATCCTGTCCCTGAGGCACGTAACAGC- 4961 Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA--CGTTTTT 364488 || ||||| || ||||| |||||||| ||||| ||||| || || || | || | Sbjct 4960 ----AACATGCGCCACCGCCCTATTGGTCTCGGTGTCCAGGGTCTAGCCGATACCTTCCT 4905 Query 364489 ATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTT 364548 || | ||| ||| | ||||| ||||| || ||||| || || ||| |||| ||| Sbjct 4904 -TGCT-CTCCGCATGCCTTTTGAATCGCCCGAAGCTCGACAGCTCAACAAGCAGATTTTT 4847 Query 364549 GAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAG 364608 || || ||||| |||||| ||||||| || || | || || | || | Sbjct 4846 GAGACCATGTACCATGCCGCTTTGACTGCATCAATGGAGATTGCTAAGGAAGAAGGTACT 4787 Query 364609 TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668 ||||||||||| ||||| || ||| |||| || || | | |||| ||| | |||||| Sbjct 4786 TACTCTACTTACGAGGGCTCTCCTGTTTCTCAAGGCATTCTTCAGTATGACATGTGGAAT 4727 Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGG 364727 ||||| || |||| | ||| |||||| ||| || | | || || || ||||| Sbjct 4726 GTCACTCCCTCTGATCTTTGGGACTGGGCTACCCTCAAGGAGCAGATCAAACAA-CATGG 4668 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 | |||||| ||| | | || |||||||| || || ||| | ||||| || || Sbjct 4667 TGTACGCAACAGTCTCCTCATGGCTCCCATGCCGACCGCCAGTACCTCGCAGATTCTGGG 4608 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 || ||||| |||||||| || | || || |||| || || || ||| | |||| Sbjct 4607 CAATAACGAATGCTTCGAGCCCTACACGTCGAACATTTACTCTCGTCGTGTTTTAGCCGG 4548 Query 364848 AGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG 364907 ||||| | || || ||| | || | |||||||| ||| | || || ||| Sbjct 4547 TGAATTCCAAGTCGTCAATCCATGGCTTCTGAAGGATCTGGTCGATCTAGGTCTATGGTC 4488 Query 364908 TGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCC-AGGAT 364966 ||| | ||||||||| |||||||||| ||| || || |||| ||||| || || Sbjct 4487 TGATAATATGAAGAACCGCATCATCGCCGAGGGTGGCTCCGTTCAGAGTATTCCTAGCAT 4428 Query 364967 TTC--CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCT 365024 | | | |||| || |||||| | ||||| || || ||||||||||| |||||| | Sbjct 4427 TCCGGCGGAAG-TCA-AAGCCT-TATACAAGACTGTCTGGGAAATTTCTCAGCGAACAGT 4371 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 | | ||||| |||||||| |||||||| || |||| || || | || |||| Sbjct 4370 AGTGCAAATGGCTGCCGATCGTGGTGCTTTCATTGATCAGTCACAATCACTCAA--TATT 4313 Query 365085 C--ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC-GGGTGGAAATC 365141 | |||| |||| || | |||| | || |||||| || ||| |||||||| Sbjct 4312 CATATGAGGGAGCCCACAATGGGCAAGATCACGAGCATGCACTT-TACTGGGTGGAAGCT 4254 Query 365142 CGGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 4253 TGGTCTGAAGACTGG 4239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303324226075538