Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1413 127 2e-24 seq1001 125 7e-24 seq1368 116 3e-21 seq1336 114 1e-20 >seq1413 Length=23416 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||| ||||| || |||| || |||||||| ||||||||||| ||||| Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | ||||| || || |||||| Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | || |||| Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACT 19451 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| || || ||||| || || || ||||| || |||||| Sbjct 19452 TCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||||| || | || |||||||| || || |||||||||||| Sbjct 19044 CCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTC 19103 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || ||| |||| | ||||||||||| ||||| Sbjct 19104 AGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGA 19163 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | || | ||||| | || || | Sbjct 19164 ATACCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACT 19223 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || ||||| |||||||| Sbjct 19224 TCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||||||| | || | ||| |||||| || |||||||| || || Sbjct 19499 GCCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACT 19558 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || || | || || ||||||||||| || || Sbjct 19559 GAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGG 19618 Query 131127 GATTCCTTCTTTGTC 131141 ||| || |||||||| Sbjct 19619 GATGCCCTCTTTGTC 19633 >seq1001 Length=42108 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | ||| |||||| || |||||||| ||| Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | ||| |||||||| || ||| Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| | ||||| | Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACC 35431 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | || || || || || || || ||||| |||||||||| Sbjct 35430 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 35382 >seq1368 Length=24850 Score = 116 bits (128), Expect = 3e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | ||| || |||||| ||||||||||| ||| ||| Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||| ||||| |||||||| || ||||| ||| || ||| | | | Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 8148 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| |||| ||| | ||| || || || || || || |||| Sbjct 8147 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 8088 Query 131225 AAATCTGCA 131233 | ||||||| Sbjct 8087 AGATCTGCA 8079 >seq1336 Length=25880 Score = 114 bits (126), Expect = 1e-20 Identities = 702/1116 (63%), Gaps = 19/1116 (2%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||||||||| || || || ||||| || |||||||| | || | ||| |||||| ||| Sbjct 4528 GATTGACGACTTGGAATTCACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGG 4587 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 | || || | |||||||||||||| || || | ||| | ||||| |||||| |||| Sbjct 4588 GCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCA 4647 Query 145176 CCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATC 145233 | | | || ||||| | || || | ||||| | ||||| || ||| |||| || Sbjct 4648 TGAGGAGACTG--TTGCGTACACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTC 4705 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 ||| || || || | || | ||||||||| ||||| | |||||| | | || Sbjct 4706 CCAAAGATCAGAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGG 4765 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAG 145353 ||| | | | | |||| | || || || | ||| || || Sbjct 4766 AGAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAATCTCCATTGATGCAGTCAA 4825 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTC-ATCGCTCT 145412 |||| | || || ||||| ||| ||| |||||||| | ||||| || | | Sbjct 4826 AGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGAT-T 4884 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 | | |||||||| || | || | |||||| || ||||| | || | || || | Sbjct 4885 CAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAG 4944 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532 | || || ||||||||| | | ||| || |||||| | || |||||| | Sbjct 4945 GGCGGTGGCGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGA 5004 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 | | |||| || ||||| || || | || | | ||| ||||| ||| ||| | | Sbjct 5005 CTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCATAGC 5064 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 || || | | |||| || | || || || ||||| || ||||| || Sbjct 5065 TTTCCGAGTTATAGTCCACGAAGGACGGTAAAGCCATGGATGCCAAGTTGCAAACAGCAA 5124 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 || || | | ||||| | | |||||| | ||| | ||| || || || | Sbjct 5125 CTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTGTAC 5184 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 |||| || | ||| || || || | ||| |||||||||||||||| | || | Sbjct 5185 CCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTC 5244 Query 145773 CAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGCT 145829 ||||||| ||| | ||| | || | | | | || | ||| || | | || Sbjct 5245 CAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAGC---TTCTGGGCTTTTATCGTCT 5301 Query 145830 GCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGC 145889 | || ||| ||||| |||| || ||| |||||| | |||||| | ||||||| Sbjct 5302 GGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGA 5361 Query 145890 AATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGA 145949 ||||| || || | ||||| ||| || |||||||| | ||| |||||| | | Sbjct 5362 CATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAA 5421 Query 145950 CGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAAT 146009 | || | ||| |||| ||| || | ||| || || | | ||| || || | Sbjct 5422 CTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTT 5481 Query 146010 CCTCAGCACCCATGTTTCGCT-TCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGG 146067 |||| | || || ||| | || || || | ||| | | | |||| ||||||||| Sbjct 5482 CCTCTTTA-CCGTGGTTCTTTCGCAGATCCAGGA-ACTCAAATACATCCGAGTGCCACGG 5539 Query 146068 TTCAATATAGACGGCGAGGGCTCCTTTTCGT---TTGCCACCCTGGTCCACGTGACGTAC 146124 ||| | || | || | || || |||| || ||||| || || |||| || | Sbjct 5540 TTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGC 5599 Query 146125 CATGTTGTTAAAGACGCGCACCATGGGCTCGACGCC 146160 ||||||| |||||||| | |||||| ||| ||| Sbjct 5600 GGTGTTGTTGAAGACGCGTAACATGGGGACGATGCC 5635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002421618560