Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1052 140 2e-28
seq800 136 3e-27
seq1413 109 4e-19
seq1001 105 4e-18
>seq1052
Length=38482
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 34038 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 33979
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 33978 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 33944
>seq800
Length=2272
Score = 136 bits (150), Expect = 3e-27
Identities = 86/93 (92%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1966 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 1907
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||||||||||||||||||||||||
Sbjct 1906 ATCCATTCATGCGCGTCACTAATTAGATGACGA 1874
>seq1413
Length=23416
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| || |||||| |||| || |||||||||||||| || || ||||| ||||||
Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || || | ||| ||||| || || || | ||||| || || | |||
Sbjct 19843 AAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGG 19902
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| ||| || ||| ||||| | || ||| || | || ||
Sbjct 19903 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACC 19962
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || || || || || || | || || ||||| |||||||||
Sbjct 19963 TCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATG 20010
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| ||| | || || ||||||||||| || || ||||| ||| | || ||
Sbjct 19512 CGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCG 19571
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || ||||||||||| || | ||| || || |||| ||||| ||| ||||||
Sbjct 19572 TCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTG 19631
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| ||| || ||| || || | || ||| || | |||||| || | ||| ||
Sbjct 19632 TCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATC 19691
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATA 38310
|| || || |||| ||| || |||| ||
Sbjct 19692 GTCTTTCCAGTCAGGGTCTTGACGACTA 19719
>seq1001
Length=42108
Score = 105 bits (116), Expect = 4e-18
Identities = 165/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || ||||| ||| | || || ||||||||||| || || ||||| || ||
Sbjct 35611 ACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 35552
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| ||| |||| || | || || ||||| || || || ||||| || |||| |||
Sbjct 35551 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGG 35492
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCA 38267
|| ||| || |||||| || || ||| ||||| | || || | ||| || ||
Sbjct 35491 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGAC--TCC 35434
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| || | || ||||| || ||||| | ||| || ||||| ||||||||| ||
Sbjct 35433 ACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATT 35380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334940019464729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |