Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1336 241 2e-58 seq1008 104 3e-17 >seq1336 Length=25880 Score = 241 bits (266), Expect = 2e-58 Identities = 485/713 (68%), Gaps = 6/713 (1%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| ||||| || || | |||| | | || |||| ||| || | ||| ||||||| | Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| |||| | || ||||||||||| || ||||||||||||||||| |||| || Sbjct 5402 CCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAA 5461 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || || | | | | |||||| || || |||||| ||||| |||||| | | Sbjct 5462 GAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAA 5521 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| || ||||||||||| | ||| || || | | | || || ||||| || || || Sbjct 5522 TACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACC 5581 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | ||| | |||||||| || | || | ||||| || | || ||||| || Sbjct 5582 TTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGA 5641 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGATAGA 63349 || |||||||| || | || || || ||||||| ||| | || ||| || Sbjct 5642 CGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAGG 5699 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCC 63408 || ||||| || ||||| || || || | || ||| ||||||| || ||||| ||||| Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGCC 5758 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| ||||||||||| |||||| | | || ||| |||||| || | | || Sbjct 5759 CTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGT 5818 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||| ||||| || | ||||| ||||| || || || |||| || | || ||||| Sbjct 5819 TCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTA 5878 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| | || || | ||| | ||| ||||| || |||||||| | ||| Sbjct 5879 GGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCAT 5938 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 |||||||||||| || || ||||| || || |||| | || ||| |||| ||| Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || || || || || | ||| ||||| || || || | ||| |||||| Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 6051 >seq1008 Length=41606 Score = 104 bits (114), Expect = 3e-17 Identities = 200/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| ||| || ||||| | ||| || | || || || ||||| || || Sbjct 1799 TCCTTAATATAGGTGTCAATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 1740 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || || || ||||||||||||| ||| |||| |||||| || || || || || || Sbjct 1739 ATCTGGAAACCGTAGAAGCATCGAGCTTCGGGAATCTGAACCTCGCCACTGAAACGCTCA 1680 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 | | ||| || || || || ||||| ||| ||||| || ||||| | || || Sbjct 1679 ACAAGATTCTCGTTGACGATACCGTCCGAGGCGGCAAAGAAGGCCAAGATGTGGGAAATG 1620 Query 33102 AAATATTTTTCGTCT--GGTG-TTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 33158 || ||||| |||||| | || || | || ||||| || | || || || || | ||| Sbjct 1619 AAGTATTTCTCGTCTTCGTTGATTCGGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCG 1560 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | || || | ||||| || |||||||| || || || ||||| | |||||| Sbjct 1559 ATCTCCTCTGCAGTCCAGAAGGATGCCTCGGCTTTCTTGTACATTTGCCAGAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618068016400