Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 241 2e-58
seq1008 104 3e-17
>seq1336
Length=25880
Score = 241 bits (266), Expect = 2e-58
Identities = 485/713 (68%), Gaps = 6/713 (1%)
Strand=Plus/Plus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
||| ||||| || || | |||| | | || |||| ||| || | ||| ||||||| |
Sbjct 5342 TTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGT 5401
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| |||| | || ||||||||||| || ||||||||||||||||| |||| ||
Sbjct 5402 CCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAA 5461
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
|| || | | | | |||||| || || |||||| ||||| |||||| | |
Sbjct 5462 GAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAA 5521
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
| ||| || ||||||||||| | ||| || || | | | || || ||||| || || ||
Sbjct 5522 TACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACC 5581
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||||| | ||| | |||||||| || | || | ||||| || | || ||||| ||
Sbjct 5582 TTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGA 5641
Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGATAGA 63349
|| |||||||| || | || || || ||||||| ||| | || ||| ||
Sbjct 5642 CGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAGG 5699
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCC 63408
|| ||||| || ||||| || || || | || ||| ||||||| || ||||| |||||
Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACAT-GTTTTAAGGGTGTCATAAATGCC 5758
Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468
||| ||||||||||| |||||| | | || ||| |||||| || | | ||
Sbjct 5759 CTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGT 5818
Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528
||| ||||| || | ||||| ||||| || || || |||| || | || |||||
Sbjct 5819 TCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTA 5878
Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588
||||| | || || | ||| | ||| ||||| || |||||||| | |||
Sbjct 5879 GGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCAT 5938
Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648
|||||||||||| || || ||||| || || |||| | || ||| |||| |||
Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998
Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
|| || || || || | ||| ||||| || || || | ||| ||||||
Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGT 6051
>seq1008
Length=41606
Score = 104 bits (114), Expect = 3e-17
Identities = 200/293 (68%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981
|| |||| ||| || ||||| | ||| || | || || || ||||| || ||
Sbjct 1799 TCCTTAATATAGGTGTCAATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 1740
Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041
|| || || ||||||||||||| ||| |||| |||||| || || || || || ||
Sbjct 1739 ATCTGGAAACCGTAGAAGCATCGAGCTTCGGGAATCTGAACCTCGCCACTGAAACGCTCA 1680
Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101
| | ||| || || || || ||||| ||| ||||| || ||||| | || ||
Sbjct 1679 ACAAGATTCTCGTTGACGATACCGTCCGAGGCGGCAAAGAAGGCCAAGATGTGGGAAATG 1620
Query 33102 AAATATTTTTCGTCT--GGTG-TTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 33158
|| ||||| |||||| | || || | || ||||| || | || || || || | |||
Sbjct 1619 AAGTATTTCTCGTCTTCGTTGATTCGGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCG 1560
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| || || | ||||| || |||||||| || || || ||||| | ||||||
Sbjct 1559 ATCTCCTCTGCAGTCCAGAAGGATGCCTCGGCTTTCTTGTACATTTGCCAGAT 1507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633618068016400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |