Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1612 95.1 2e-14 seq1414 86.0 1e-11 seq1025 86.0 1e-11 seq890 86.0 1e-11 >seq1612 Length=17799 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 ||| ||||||||| ||||| ||||| || ||||| || || ||||| |||||||||||| Sbjct 3228 TTGCTGTCATTGGCCCCAACGGTGCAGGGAAGTCGACTCTGATCAAGCTCCTGACTGGCG 3169 Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCG 280287 || |||||| || ||| ||||||||| || |||| || | ||| || Sbjct 3168 AGGTTATTCCCACTGCCGGCCGGGTTGAGAAGCATCCTAATTTGCGTATTGGATACATCA 3109 Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347 ||||| || | | || | |||| ||||| || | ||| ||||| || ||| | | Sbjct 3108 AGCAGCATGCCCTAGAACATGTGGAGATGCACCTTGAGAAGACACCTAATCAGTACCTAC 3049 Query 280348 AGTGGCGCTATGCAAGTGGGCAGGATC 280374 ||||| | ||||| | ||| | |||| Sbjct 3048 AGTGGAGGTATGCCAATGGCGATGATC 3022 >seq1414 Length=76735 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 10881 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 10940 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 10941 CCCGCATCGGGC 10952 >seq1025 Length=40165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 4899 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 4840 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 4839 CCCGCATCGGGC 4828 >seq890 Length=50075 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 31912 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 31971 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 31972 CCCGCATCGGGC 31983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027813635449319