Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1612 95.1 2e-14
seq1414 86.0 1e-11
seq1025 86.0 1e-11
seq890 86.0 1e-11
>seq1612
Length=17799
Score = 95.1 bits (104), Expect = 2e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227
||| ||||||||| ||||| ||||| || ||||| || || ||||| ||||||||||||
Sbjct 3228 TTGCTGTCATTGGCCCCAACGGTGCAGGGAAGTCGACTCTGATCAAGCTCCTGACTGGCG 3169
Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCG 280287
|| |||||| || ||| ||||||||| || |||| || | ||| ||
Sbjct 3168 AGGTTATTCCCACTGCCGGCCGGGTTGAGAAGCATCCTAATTTGCGTATTGGATACATCA 3109
Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347
||||| || | | || | |||| ||||| || | ||| ||||| || ||| | |
Sbjct 3108 AGCAGCATGCCCTAGAACATGTGGAGATGCACCTTGAGAAGACACCTAATCAGTACCTAC 3049
Query 280348 AGTGGCGCTATGCAAGTGGGCAGGATC 280374
||||| | ||||| | ||| | ||||
Sbjct 3048 AGTGGAGGTATGCCAATGGCGATGATC 3022
>seq1414
Length=76735
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 10881 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 10940
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 10941 CCCGCATCGGGC 10952
>seq1025
Length=40165
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 4899 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 4840
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 4839 CCCGCATCGGGC 4828
>seq890
Length=50075
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 31912 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 31971
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 31972 CCCGCATCGGGC 31983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027813635449319
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |