Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 140 8e-28
seq1368 120 7e-22
seq1413 107 5e-18
seq1008 104 6e-17
>seq1001
Length=42108
Score = 140 bits (154), Expect = 8e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| || | ||||| || || ||||| || ||||||| |
Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || || || |||||||||||||| || || |||
Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | |||||||| || ||
Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACC 35431
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
||||| ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 35430 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 35381
>seq1368
Length=24850
Score = 120 bits (132), Expect = 7e-22
Identities = 141/188 (75%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| ||| || || ||||| || | || || || ||||||||
Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404
|||||||| ||| |||||||| || || |||||||| || ||| ||||| || ||
Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTC 8147
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||| || || || ||||| ||||| ||||| || || || |||||||||||
Sbjct 8146 GATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 8087
Query 288465 TATCTGCA 288472
|||||||
Sbjct 8086 GATCTGCA 8079
>seq1413
Length=23416
Score = 107 bits (118), Expect = 5e-18
Identities = 143/195 (73%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| || ||| || || || || ||||| | || || || ||||||
Sbjct 19080 TCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAG 19139
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCAC 288398
|| || ||||| || ||||| || ||||| || ||||| || || ||| |||||
Sbjct 19140 ATAAGGCGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGAATCTT-GCTCTTCAC 19195
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||| || || | ||| |||||| ||||| | ||||| ||||| || |||| |||||
Sbjct 19196 GTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTT 19255
Query 288459 GACGAATATCTGCAT 288473
|||||| ||||||||
Sbjct 19256 GACGAAGATCTGCAT 19270
Score = 105 bits (116), Expect = 2e-17
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || |||||| || || || ||||| || | || || || ||||||
Sbjct 19308 TCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAG 19367
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
|| || ||||||||| ||||| ||||| || || ||||| || ||| || |||||
Sbjct 19368 ATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGATCTT-GCTCTTTACGTT 19426
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || ||||| ||||| || || |||||||| ||||| || ||||||||
Sbjct 19427 GTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGAC 19486
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 19487 GAAGATTTGCAT 19498
Score = 105 bits (116), Expect = 2e-17
Identities = 159/225 (71%), Gaps = 1/225 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| || || || || | || || || || | ||||| || || ||||| || ||||
Sbjct 19496 CATG-CCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGT 19554
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| ||| || || ||||| || | || ||||| || || |||| ||||| ||
Sbjct 19555 CACTGAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGG 19614
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || ||||| ||||| || |||| || ||||| || |||| || ||||
Sbjct 19615 GGGGGATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATT 19674
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466
| || || || ||||||||||| || ||||| |||||||||| ||
Sbjct 19675 CAACCTCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGACGACTA 19719
>seq1008
Length=41606
Score = 104 bits (114), Expect = 6e-17
Identities = 142/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-C 269208
|| ||||||||||||| | |||||||| || || || || |||||||| |||||| | |
Sbjct 2232 TGCTCGGTATGAATGCAAACCTCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGC 2291
Query 269209 TTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAA 269268
|| | || | || ||||||| || ||| || | || || |||| || |||||
Sbjct 2292 TTGTC-GCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAG 2350
Query 269269 CTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACG 269327
|||||||||| || ||||| ||||||||||||||||| ||| | || || || | |
Sbjct 2351 AACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGCGTCGGTGATTACCAGAAG 2410
Query 269328 TCCTGGTGTAATG 269340
|| ||||| |||
Sbjct 2411 GCC-GGTGTTATG 2422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179627813907602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |