Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1001 140 8e-28 seq1368 120 7e-22 seq1413 107 5e-18 seq1008 104 6e-17 >seq1001 Length=42108 Score = 140 bits (154), Expect = 8e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||||| || || ||||| || ||||||| | Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||||||||| || || ||| Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | |||||||| || || Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACC 35431 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| ||||| ||||| || || || ||||||||||| |||||||| || Sbjct 35430 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 35381 >seq1368 Length=24850 Score = 120 bits (132), Expect = 7e-22 Identities = 141/188 (75%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| || || ||||| || | || || || |||||||| Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 |||||||| ||| |||||||| || || |||||||| || ||| ||||| || || Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTC 8147 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || ||||| ||||| ||||| || || || ||||||||||| Sbjct 8146 GATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 8087 Query 288465 TATCTGCA 288472 ||||||| Sbjct 8086 GATCTGCA 8079 >seq1413 Length=23416 Score = 107 bits (118), Expect = 5e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || ||| || || || || ||||| | || || || |||||| Sbjct 19080 TCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAG 19139 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCAC 288398 || || ||||| || ||||| || ||||| || ||||| || || ||| ||||| Sbjct 19140 ATAAGGCGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGAATCTT-GCTCTTCAC 19195 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| |||||| ||||| | ||||| ||||| || |||| ||||| Sbjct 19196 GTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTT 19255 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 19256 GACGAAGATCTGCAT 19270 Score = 105 bits (116), Expect = 2e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || |||||| || || || ||||| || | || || || |||||| Sbjct 19308 TCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAG 19367 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || || ||||||||| ||||| ||||| || || ||||| || ||| || ||||| Sbjct 19368 ATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGATCTT-GCTCTTTACGTT 19426 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| ||||| || || |||||||| ||||| || |||||||| Sbjct 19427 GTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGAC 19486 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 19487 GAAGATTTGCAT 19498 Score = 105 bits (116), Expect = 2e-17 Identities = 159/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || || | ||||| || || ||||| || |||| Sbjct 19496 CATG-CCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGT 19554 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||| || || ||||| || | || ||||| || || |||| ||||| || Sbjct 19555 CACTGAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGG 19614 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || ||||| ||||| || |||| || ||||| || |||| || |||| Sbjct 19615 GGGGGATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATT 19674 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 | || || || ||||||||||| || ||||| |||||||||| || Sbjct 19675 CAACCTCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGACGACTA 19719 >seq1008 Length=41606 Score = 104 bits (114), Expect = 6e-17 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-C 269208 || ||||||||||||| | |||||||| || || || || |||||||| |||||| | | Sbjct 2232 TGCTCGGTATGAATGCAAACCTCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGC 2291 Query 269209 TTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAA 269268 || | || | || ||||||| || ||| || | || || |||| || ||||| Sbjct 2292 TTGTC-GCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAG 2350 Query 269269 CTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACG 269327 |||||||||| || ||||| ||||||||||||||||| ||| | || || || | | Sbjct 2351 AACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGCGTCGGTGATTACCAGAAG 2410 Query 269328 TCCTGGTGTAATG 269340 || ||||| ||| Sbjct 2411 GCC-GGTGTTATG 2422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627813907602