Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1604 102 2e-16 seq1008 95.1 3e-14 >seq1604 Length=18022 Score = 102 bits (112), Expect = 2e-16 Identities = 176/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| || | | ||| | || ||| | | ||| || |||||||| ||| | |||||| Sbjct 6338 AGTCGATCGTTGTCATTTCAGTATCAGCCGAGTCAAGGTCGTGTTCGACGAAGACAGTTT 6279 Query 334165 TCAAAACATC-CGCAGA--GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCA 334221 | ||| || | | | |||||| || || | ||| |||| || |||||||||| Sbjct 6278 T---AACCTCGCTCTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCGCGCATCA 6222 Query 334222 GAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGAT 334281 ||||||| || |||| ||||| || || || ||||||||||| |||||||| || Sbjct 6221 GAGTTGACTTGCCCGAACCGTTGGGACCGCAAAGACCGTAGCGACGACCACGCTTTAGTC 6162 Query 334282 TGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCAC 334341 | | || | ||| || || ||||| |||| || || ||||| ||| |||| | Sbjct 6161 GTAGGTGTGTCTGGTTGAGCAGGATTTTGGCACCGTAGGCGAGAGAGAATGTGCAATTGC 6102 Query 334342 ACAGATCCTCACC 334354 | ||||||||||| Sbjct 6101 AGAGATCCTCACC 6089 >seq1008 Length=41606 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| | || ||| | || | || ||||| | | |||||| |||||||| || Sbjct 2213 GAGGCTCTACCTTGCGGTCTGCTCGGTATGAATGCAAACCTCATGAAGCAGTACATTGAG 2272 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| ||||| || | | |||| | || ||||||| || ||| ||| | ||| Sbjct 2273 TTCGTGGCCGATCGTCTGCTTGTCGCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAAC 2332 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || || | || |||||| ||||||||| || || || ||||||||||||||||| Sbjct 2333 CCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGC 2392 Query 243724 GTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 ||| ||||||| || | | || ||||| ||| Sbjct 2393 GTCGGTGATTACCAGAAGGCC-GGTGTTATG 2422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102855144186650