Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 132 5e-26
seq1413 111 2e-19
>seq1001
Length=42108
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||| | || | ||||||||||| || || ||||| || | || || || |
Sbjct 35599 ACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCC 35540
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || ||||| || || || |||||||||| || | || ||||||
Sbjct 35539 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTT 35480
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || |||| | | | ||||||||||| ||||| |||| |||||
Sbjct 35479 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGAT 35420
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||||||| || ||||| || ||||| |||||
Sbjct 35419 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384
>seq1413
Length=23416
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| |||| | |||||| |||| || | ||||||||||| || || ||||| |||| |
Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || || ||||| |||||||| || | ||| |||||||| | ||
Sbjct 19843 AAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGG 19902
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || |||||||||| ||| | || | |||| | | | ||||| || |||||
Sbjct 19903 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCAC 19961
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 19962 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || ||||||||||| |||||| || | || || |||||||||||||||||
Sbjct 19079 CTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAA 19138
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | | ||||||||| ||| | || | | |||
Sbjct 19139 GATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC-TGAATCTTGCTCTTCACGT 19197
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || || ||||||||| || | |||||||| || || || | ||||| |
Sbjct 19198 TGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGA 19257
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 19258 CGAAGATCTGCAT 19270
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
||||| | |||||| || | || |||||| ||||| ||||| || ||||| ||
Sbjct 19281 AAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGG 19340
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
|||| || ||||||||||||||||| || |||||||| || |||| || | | |||
Sbjct 19341 CCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCC 19400
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 42169
||||| ||| || || | ||| | | | ||||| ||||| || || | ||
Sbjct 19401 TTGTCTTGGATCTTGCTCTTTA-CGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGT 19459
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || || || ||||| || |||||||||||
Sbjct 19460 AATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543200856108560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |