Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1413 100 3e-16 seq1368 89.7 5e-13 seq1001 84.2 2e-11 >seq1413 Length=23416 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | |||||| | || | ||| || || || ||||||||||| || Sbjct 19271 ACCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCT 19330 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || |||||||| || || | || || ||||| || |||||||| Sbjct 19331 TAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGG 19390 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || || |||||| || | || || | || || Sbjct 19391 GATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGAC 19450 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 19451 TTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||||| || | || || || || || || |||||||| Sbjct 19043 ACCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCT 19102 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || || | || || ||||||||||| ||||| Sbjct 19103 CAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGG 19162 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| || || | ||||| | ||||| Sbjct 19163 AATACCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCAC 19222 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || ||||| || || ||||| || ||||| Sbjct 19223 TTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 >seq1368 Length=24850 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||| || |||| ||||||||||||||||| | || Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || |||||||| || || || ||||| || || || || || || ||| ||| || Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 8146 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | ||||||||| || | || || ||||| Sbjct 8145 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 8086 Query 64436 ATTTGCATTTTAAT 64449 || |||| | |||| Sbjct 8085 ATCTGCACTGTAAT 8072 >seq1001 Length=42108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || ||| || |||| || |||||||||||||| | Sbjct 35574 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 35515 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || || ||||||||||| || || || || || || || || || ||| ||| Sbjct 35514 ATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 35455 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | | ||||| || | || | |||||||| || | || || ||| Sbjct 35454 TCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 35395 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 35394 AAGATCTGCAT 35384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633814059960