Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1336 194 2e-44 >seq1336 Length=25880 Score = 194 bits (214), Expect = 2e-44 Identities = 607/929 (65%), Gaps = 12/929 (1%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||||||||| ||||| || || ||||| |||| Sbjct 6022 AACTACCAATACTTCGGCTTCAAGACTCTGGAGCGATCGTATCTTCTGAAGATCAATGGA 5963 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||| |||| || || || | ||||| || || | || ||| || || Sbjct 5962 AAGATTGTCGAGAGACCTCAGCACATGATCATGCGTGTGGCGGTAGGTATTTGGGGAGAC 5903 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | ||| || | | | | || |||| ||| | ||| || Sbjct 5902 GATGTTGAGAAAGTCCTCGAGACCTACAACCTCATGTCCCTCAAATACTTCACCCATGCT 5843 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| || |||||||| || || |||||| ||| ||||||||||| || ||| || | Sbjct 5842 TCCCCTACACTGTTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTC 5783 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | || | || || || |||| |||| ||| || ||||| | || Sbjct 5782 GAC-ATGAAAGATGATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGAT 5724 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 || || || || ||||| || | | ||| || |||| ||||||| ||| || Sbjct 5723 TTCCAAGATGGCTGGCGGAATTGGCCTGAATGTACAT--CGTATCCGTGCCACGGGCTCT 5666 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||||||||||||| || || ||| ||||||| ||| | || ||||||||| Sbjct 5665 TACATTGCCGGTACCAATGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAAC 5606 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||| || || |||||| | | ||| |||| || | || Sbjct 5605 AACACCGCCCGCTACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTAC 5546 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 ||||| || |||||| |||| || | ||| | || ||||||||||||||||| || Sbjct 5545 CTCGAACCGTGGCACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAA 5486 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || | ||||||||| || || ||| | || || || || |||||| Sbjct 5485 GAGGAAGTTCGTGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAA 5426 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||||| ||| | ||||| || | || || || || ||| | || || || Sbjct 5425 CGAGTTGAGAAGAACGGCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCC 5366 Query 94372 GACGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAG 94428 || || | | ||| | | ||||||| | | || | || ||| | |||| | | Sbjct 5365 GATGTCTACGGTGAT-GAG-TTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTCGCG 5308 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 ||| | || || | || |||||| ||| || || | || | ||| ||| Sbjct 5307 GCC-GCCAGACGATAAAAGCCCAGAAGCTCTGGTATGCCATTCTAGAGGCTCAGACAGAG 5249 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | ||||||| | ||| |||| ||||||| || || Sbjct 5248 ACTGGAAACCCCTTCATGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAAC 5189 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || || || ||||| ||||| ||||| | ||||| | | |||| || Sbjct 5188 CTGGGTACAATTCGTAGTTCTAATCTCTGCACTGAGATCATTGAGTACAGTGCTCCAGAT 5129 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 || ||||||| || ||| ||| ||||| Sbjct 5128 GAAGTTGCTGTTTGCAACTTGGCATCCAT 5100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494712322273640