Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 114 1e-20
seq1001 104 2e-17
seq1008 89.7 5e-13
seq1368 84.2 2e-11
>seq1413
Length=23416
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||||||| | || || |||| | |||||||| |||||||||||||||||
Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || |||||| || || ||||| | |||| || |||||||| || |||||
Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||| ||||| ||| || |||| | || | |||||| | || || ||
Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACT 19451
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | ||| || || || || || || || || || ||||||
Sbjct 19452 TCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499
>seq1001
Length=42108
Score = 104 bits (114), Expect = 2e-17
Identities = 141/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| | ||||| ||||||||| || || |||| |
Sbjct 35575 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 35516
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541
||| ||||| || ||||| || || || || || ||||| ||| || || | |||
Sbjct 35515 GATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 35456
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
|| | | ||||||| ||||||||||||||| || | || || || || || || || |
Sbjct 35455 GT-CGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 35397
Query 138602 CAAAAATCTGCATG 138615
| || |||||||||
Sbjct 35396 CGAAGATCTGCATG 35383
>seq1008
Length=41606
Score = 89.7 bits (98), Expect = 5e-13
Identities = 242/367 (66%), Gaps = 25/367 (7%)
Strand=Plus/Plus
Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541
|||||||||||||| ||| |||||| | || ||||| |||||||| || ||||| |||
Sbjct 2051 ATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGAC 2110
Query 52542 TTTGCGTGCCTCT---------ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGAC 52592
||||| || || | ||| |||| || | || ||| | | ||| |
Sbjct 2111 TTTGCCTGTCTATTGTTTTCCCACTTGAAGAACCG---GCCCAGCAAA--GAAGTCGTAG 2165
Query 52593 ACGATCCTGAGCATGT-TCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGC 52651
| |||| | || || || ||| ||||| | || || | || | ||
Sbjct 2166 A--------AGCAGTTATCGTCGATGCCGTGAGGATCGAGCAAGAATTCCTGACAGAGGC 2217
Query 52652 GCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGT 52711
|| || || ||||| || ||||| || | |||| ||||||| ||||| ||
Sbjct 2218 TCTACCTTGCGGTCTGCTCGGTATGAATGCAAACCTCATGAAGCAGTACATTGAGTTCGT 2277
Query 52712 GGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGT 52770
||| ||||||||| | || | | ||||| | ||| || | | || ||| ||||
Sbjct 2278 GGCCGATCGTCTGCTTGT-CGCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAACCCGT 2336
Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830
| || || ||| | ||||||||||| | |||||||| ||||| ||||| ||||| ||||
Sbjct 2337 TCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGCGTCG 2396
Query 52831 GCGAGTA 52837
| || ||
Sbjct 2397 GTGATTA 2403
>seq1368
Length=24850
Score = 84.2 bits (92), Expect = 2e-11
Identities = 134/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || |||||||||||| | || || |||||| || || || |||| |||
Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGT 138543
| |||||||| || ||||| || || || || ||||| ||| || | || ||||
Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTG- 8149
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||||| ||||| ||||||| || | || || || || || || || ||
Sbjct 8148 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 8089
Query 138604 AAAATCTGCA 138613
|| |||||||
Sbjct 8088 AAGATCTGCA 8079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496251488430480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |