Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1413 114 1e-20 seq1001 104 2e-17 seq1008 89.7 5e-13 seq1368 84.2 2e-11 >seq1413 Length=23416 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||| | || || |||| | |||||||| ||||||||||||||||| Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || ||||| | |||| || |||||||| || ||||| Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || |||| | || | |||||| | || || || Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACT 19451 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || || || || || || || || |||||| Sbjct 19452 TCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499 >seq1001 Length=42108 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | ||||| ||||||||| || || |||| | Sbjct 35575 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 35516 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| ||||| || ||||| || || || || || ||||| ||| || || | ||| Sbjct 35515 GATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 35456 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | ||||||| ||||||||||||||| || | || || || || || || || | Sbjct 35455 GT-CGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 35397 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 35396 CGAAGATCTGCATG 35383 >seq1008 Length=41606 Score = 89.7 bits (98), Expect = 5e-13 Identities = 242/367 (66%), Gaps = 25/367 (7%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||||||||| ||| |||||| | || ||||| |||||||| || ||||| ||| Sbjct 2051 ATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGAC 2110 Query 52542 TTTGCGTGCCTCT---------ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGAC 52592 ||||| || || | ||| |||| || | || ||| | | ||| | Sbjct 2111 TTTGCCTGTCTATTGTTTTCCCACTTGAAGAACCG---GCCCAGCAAA--GAAGTCGTAG 2165 Query 52593 ACGATCCTGAGCATGT-TCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGC 52651 | |||| | || || || ||| ||||| | || || | || | || Sbjct 2166 A--------AGCAGTTATCGTCGATGCCGTGAGGATCGAGCAAGAATTCCTGACAGAGGC 2217 Query 52652 GCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGT 52711 || || || ||||| || ||||| || | |||| ||||||| ||||| || Sbjct 2218 TCTACCTTGCGGTCTGCTCGGTATGAATGCAAACCTCATGAAGCAGTACATTGAGTTCGT 2277 Query 52712 GGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGT 52770 ||| ||||||||| | || | | ||||| | ||| || | | || ||| |||| Sbjct 2278 GGCCGATCGTCTGCTTGT-CGCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAACCCGT 2336 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | || || ||| | ||||||||||| | |||||||| ||||| ||||| ||||| |||| Sbjct 2337 TCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGCGTCG 2396 Query 52831 GCGAGTA 52837 | || || Sbjct 2397 GTGATTA 2403 >seq1368 Length=24850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| | || || |||||| || || || |||| ||| Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGT 138543 | |||||||| || ||||| || || || || ||||| ||| || | || |||| Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTG- 8149 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||||| ||||| ||||||| || | || || || || || || || || Sbjct 8148 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 8089 Query 138604 AAAATCTGCA 138613 || ||||||| Sbjct 8088 AAGATCTGCA 8079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251488430480