Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 131 2e-25
seq1001 93.3 4e-14
seq1368 84.2 2e-11
>seq1413
Length=23416
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || || || | |||||| |||| ||||||||| || ||||| ||||| ||||
Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || |||||| |||| | |||||| |||||||||||
Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391
Query 127007 ATGCCCTCCTTGTCCGTGAT-TTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || |||||||| ||| || || || |||| |||| |||||| | | |||||
Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTACGTTG-TCGATGGTGTCTGAAGATTCGAC 19450
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| | || | ||| || ||||| || || || || || || ||||||
Sbjct 19451 TTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| |||| || | || ||| || || || ||||| || |
Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || ||||||||| | |||||||| ||||| || |||||
Sbjct 19843 AAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGG 19902
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || || ||||| | |||| ||||||| | ||| ||
Sbjct 19903 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACC 19962
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||| || ||||| || || || |||||||||
Sbjct 19963 TCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATG 20010
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || ||||||||||||| || || ||| ||| || ||||| || |||
Sbjct 19074 GTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCA 19133
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || ||||| || || ||||||||| || || |||
Sbjct 19134 GCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTGCTCTTC 19193
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | ||| || | || ||||| | ||| | || || || |||| ||
Sbjct 19194 ACGTTG-TCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGT 19252
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 19253 CTTGACGAAGATCTGCAT 19270
>seq1001
Length=42108
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||||| || ||||| ||||| || ||||||||||||
Sbjct 35538 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTG 35479
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | |||| |||||| | ||| || |||| ||| |
Sbjct 35478 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATA 35419
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| || || || || || || |||||||||
Sbjct 35418 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 35383
>seq1368
Length=24850
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||| | ||||||||||| || || || |||||||||
Sbjct 8232 TCCTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTG 8173
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | |||| |||||| | |||||| |||| ||| |
Sbjct 8172 TCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATG 8113
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112
|| ||||| || || || || || || |||||||
Sbjct 8112 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCA 8079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475490344926160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |