Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1008 113 7e-20 seq1336 86.0 1e-11 >seq1008 Length=41606 Score = 113 bits (124), Expect = 7e-20 Identities = 160/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 159913 AAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGA 159972 ||||| || || ||||||||| ||| || || ||||| || ||||||| |||||| || Sbjct 2128 AAACAATAGACAGGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTAGA 2069 Query 159973 CATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACC 160032 | | | ||||| ||||| | |||||| |||||||| || || | || |||||||| Sbjct 2068 GAAGGTCAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACC 2009 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTT 160092 ||| || ||||| || || ||||| || || || | || | | |||||| | || Sbjct 2008 GCTGAAGAAGATACCTTCAACGGCAGCGAAAGCAATCAGACGTTGGGCAAAAGTCGAATT 1949 Query 160093 GGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136 | ||| ||||| || ||||| ||||||||| |||||| Sbjct 1948 GCGATCAGCAATCCACTTTAGAGCCCAGTCAGCCTTC-TTGCGA 1906 >seq1336 Length=25880 Score = 86.0 bits (94), Expect = 1e-11 Identities = 186/276 (67%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 204239 GTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATG 204298 ||| | || ||||| ||||| ||||| | |||||| | ||| ||||| || |||||| Sbjct 4581 GTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATG 4640 Query 204299 GGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGT 204357 ||||||| ||| || |||||| ||||| | || || || |||| ||| || | | Sbjct 4641 GGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGA-TCTGCTCCTTGAGGGTAGC 4699 Query 204358 CCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 |||||| | || ||| | || ||||||||| |||||| ||||||||| Sbjct 4700 CCAGTCCCAAAGATCAGAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGA 4759 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477 || || ||||| ||| || | |||| || || | || | || || || Sbjct 4760 AACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAATCTCCATTGATGC 4819 Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 | || ||| || ||||||||||||||| ||||| Sbjct 4820 AGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTG 4855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795137716525040