Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1001 165 9e-36 seq1413 118 1e-21 seq1368 116 4e-21 >seq1001 Length=42108 Score = 165 bits (182), Expect = 9e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || || | || |||||||| ||||| ||||||||||| || || || | Sbjct 35599 ACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCC 35540 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| |||| || |||||||||| || | || |||||| Sbjct 35539 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTT 35480 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | ||||||||||| ||||| || | ||||| Sbjct 35479 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGAT 35420 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || || ||||| ||||| Sbjct 35419 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384 >seq1413 Length=23416 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || || | || |||||||| ||||| |||||||| || || || || Sbjct 19512 CGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCG 19571 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| ||||| || ||||||||||||||||||| || | || ||| ||| Sbjct 19572 TCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTG 19631 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | ||||| ||||| || || | ||||| Sbjct 19632 TCCTGAATCTTCGACTTGA-CGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTGAT 19690 Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581 || || || ||||| || || || Sbjct 19691 CGTCTTTCCAGTCAGGGTCTTGAC 19714 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || || | ||| |||||| ||||||||||| ||| ||||| || | Sbjct 19055 ACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACC 19114 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || ||||| || | |||||||||||| | || | | ||||| Sbjct 19115 ATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTT 19174 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| |||| | ||| | | | || || ||||||||| |||| |||| Sbjct 19175 GTCCTGAATCTTGCTCTTCA-CGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGA 19233 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || |||| || || || ||||| ||||| Sbjct 19234 TGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | ||||| || | ||| |||||| || || ||||||||| |||||| || Sbjct 19281 AAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGG 19340 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || |||||||| || ||||| || | ||||| || |||| || | | ||| Sbjct 19341 CCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCC 19400 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGT 46554 ||||| |||||| |||| | ||| | | | ||||| ||||| || || | || Sbjct 19401 TTGTCTTGGATCTTGCTCTTTA-CGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGT 19459 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || || ||||||||||| Sbjct 19460 AATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498 >seq1368 Length=24850 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || |||| || ||||||||||||||||| | Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | |||||||| || | || | | |||||||||| |||||| |||| | | Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 8148 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| |||||||| || || || || | Sbjct 8147 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 8088 Query 46584 AGATTTGCA 46592 |||| |||| Sbjct 8087 AGATCTGCA 8079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565225971820680