Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1008 143 3e-29
seq1368 136 4e-27
seq1001 134 1e-26
seq1413 123 2e-23
>seq1008
Length=41606
Score = 143 bits (158), Expect = 3e-29
Identities = 197/275 (72%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
|||||||| ||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 1790 TAGGTGTCAATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 1731
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
||||| ||||| || || ||| | ||| || || | ||||||||| || |||||
Sbjct 1730 CCGTAGAAGCATCGAGCTTCGGGAATCTGAACCTCGCCACTGAAACGCTCAACAAGATTC 1671
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
||||||||||| ||||| |||||| || ||||||| | ||| ||||| | |
Sbjct 1670 TCGTTGACGATACCGTCCGAGGCGGCAAAGAAGGCCAAGATGTGGGAAATGAAGTATTTC 1611
Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|||| ||||| | || | ||||||| | |||||||||||| || | ||||||
Sbjct 1610 TCGTCTTCGTTGATTCGGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCGATCTCCTCT 1551
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || ||||||||||| ||||||||
Sbjct 1550 GCAGTCCAGAAGGATGCCTCGGCTTTCTTGTACAT 1516
>seq1368
Length=24850
Score = 136 bits (150), Expect = 4e-27
Identities = 147/191 (77%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304
|||| || ||||| || || ||||||||||| ||||||||| |||| |||||| || |||
Sbjct 8079 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCG 8138
Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | | | || | | |||| || |||| ||||| |||||||| ||| | || ||
Sbjct 8139 ACACCATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCA 8196
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| ||||| || |||| || |||||| |||||||||
Sbjct 8197 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAA 8256
Query 38423 CATCCAAAAGG 38433
|||||| ||||
Sbjct 8257 CATCCAGAAGG 8267
>seq1001
Length=42108
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | | |
Sbjct 35384 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC 35443
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 35444 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 35503
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||| ||||| ||||| || |||| || |||||| ||||||||||
Sbjct 35504 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 35563
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| ||| || || || | ||||||||| || | || ||
Sbjct 35564 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 35610
>seq1413
Length=23416
Score = 123 bits (136), Expect = 2e-23
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || || || || | || ||||| | |
Sbjct 19498 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCA 19439
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| |||||| || |||| ||||| || || || || |||| |
Sbjct 19438 GACACCATCGACAACG--TAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATC 19381
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| || || | ||| || || |||||||| |||| || || || | ||||||||
Sbjct 19380 AACAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACA 19321
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| || ||||| | ||||| || |||||||| |||||| | || ||
Sbjct 19320 ACATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGG 19272
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | |
Sbjct 20009 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 19950
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || || | ||||| ||||| || || | |||||
Sbjct 19949 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 19890
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | |||| ||| || || || ||||| || | |||||| | |||||||||
Sbjct 19889 CAACGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAC 19830
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||| ||| || || || |||| ||||| || |||| |||
Sbjct 19829 ATCCAGAAGGAGAGC-ACTCTCCACCTGGTATTGCGTCTGCGAGGTGGC 19782
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||||||||| || ||| ||||||| ||||| | |||| || || || ||||| ||
Sbjct 19633 GACAAAGAGGGCATCCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGAAAGCAGCTCGAG 19574
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
|||| || || |||| |||||||||||||| ||||| ||| || || || | |||||
Sbjct 19573 GACGGCCGAACACTCAGTGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCTTGTGCT 19515
Query 38456 GCGTTTGAGAGGCGGC 38471
||| | | ||||||
Sbjct 19514 GCGCCTTCGTGGCGGC 19499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500161802450560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |