Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1008 143 3e-29 seq1368 136 4e-27 seq1001 134 1e-26 seq1413 123 2e-23 >seq1008 Length=41606 Score = 143 bits (158), Expect = 3e-29 Identities = 197/275 (72%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 |||||||| ||||| || || | || ||||| | ||||||||| ||| || || Sbjct 1790 TAGGTGTCAATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAA 1731 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || || ||| | ||| || || | ||||||||| || ||||| Sbjct 1730 CCGTAGAAGCATCGAGCTTCGGGAATCTGAACCTCGCCACTGAAACGCTCAACAAGATTC 1671 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||| ||||| |||||| || ||||||| | ||| ||||| | | Sbjct 1670 TCGTTGACGATACCGTCCGAGGCGGCAAAGAAGGCCAAGATGTGGGAAATGAAGTATTTC 1611 Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| ||||| | || | ||||||| | |||||||||||| || | |||||| Sbjct 1610 TCGTCTTCGTTGATTCGGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCGATCTCCTCT 1551 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || ||||||||||| |||||||| Sbjct 1550 GCAGTCCAGAAGGATGCCTCGGCTTTCTTGTACAT 1516 >seq1368 Length=24850 Score = 136 bits (150), Expect = 4e-27 Identities = 147/191 (77%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || ||||| || || ||||||||||| ||||||||| |||| |||||| || ||| Sbjct 8079 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCG 8138 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | || | | |||| || |||| ||||| |||||||| ||| | || || Sbjct 8139 ACACCATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCA 8196 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 8197 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAA 8256 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 8257 CATCCAGAAGG 8267 >seq1001 Length=42108 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | | | Sbjct 35384 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC 35443 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 35444 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 35503 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 35504 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 35563 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| || || || | ||||||||| || | || || Sbjct 35564 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 35610 >seq1413 Length=23416 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || || || | || ||||| | | Sbjct 19498 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCA 19439 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| |||||| || |||| ||||| || || || || |||| | Sbjct 19438 GACACCATCGACAACG--TAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATC 19381 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| || || |||||||| |||| || || || | |||||||| Sbjct 19380 AACAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACA 19321 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||||| | ||||| || |||||||| |||||| | || || Sbjct 19320 ACATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGG 19272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | Sbjct 20009 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 19950 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| || || | ||||| Sbjct 19949 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 19890 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || || || ||||| || | |||||| | ||||||||| Sbjct 19889 CAACGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAC 19830 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| ||| || || || |||| ||||| || |||| ||| Sbjct 19829 ATCCAGAAGGAGAGC-ACTCTCCACCTGGTATTGCGTCTGCGAGGTGGC 19782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||||||||| || ||| ||||||| ||||| | |||| || || || ||||| || Sbjct 19633 GACAAAGAGGGCATCCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGAAAGCAGCTCGAG 19574 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 |||| || || |||| |||||||||||||| ||||| ||| || || || | ||||| Sbjct 19573 GACGGCCGAACACTCAGTGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCTTGTGCT 19515 Query 38456 GCGTTTGAGAGGCGGC 38471 ||| | | |||||| Sbjct 19514 GCGCCTTCGTGGCGGC 19499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161802450560