Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq873 282 5e-71
seq1221 158 2e-33
seq1336 123 3e-23
>seq873
Length=51870
Score = 282 bits (312), Expect = 5e-71
Identities = 476/686 (69%), Gaps = 6/686 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || | ||||| || ||||||||
Sbjct 50329 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCC 50270
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | |||||||| || ||||||||||| || || || || || |||
Sbjct 50269 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATCAGAACG 50210
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| ||||| || || || || || ||
Sbjct 50209 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAAGCGATGGCGGCAGCGGTAGGCTCG 50150
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| ||| ||| || || ||||| | ||||| || || ||||| ||
Sbjct 50149 TTGATGATACGGAGAACGTTGAGACCGGCAATGAGACCGGCATCCTTGGTGGCTTGACGC 50090
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| | ||||| |||||||| ||||| || | ||| |||| |||| | ||| ||
Sbjct 50089 TGGGCGTCGTTGAAGTAGGCAGGGACGGTGATGACAGCGTTGTTGACGGTACCACCCAGG 50030
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || ||| | || ||| ||||| || ||||| || || ||||| || | |
Sbjct 50029 TAAGCCTCGGCGGTCTCGCGCATCTTGGTGAGGACCATGGAAGAGATCTCCTCGGGGGTG 49970
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
|| || || || || || | || || || | || || || |||| | | |
Sbjct 49969 AAGGTCTTGGTCTCGCCCTTGTACTCGACCTCGACGATAGGCTT-GCCGC--CCTTGTCG 49913
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| | ||| | | | | ||||| ||| | || |||| |||||| | |||||| |
Sbjct 49912 ATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGAACCTCTTGGTCGGCAAACTTGCGG 49853
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || |||||||| || || || |||||||| ||||||||||| ||||||||
Sbjct 49852 CCAATCAGACGCTTGGCGTCGAAGACTGTGTTAGACGGGTTCATGGCGACCTGGTTCTTG 49793
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || ||||| ||||| || || || || || || ||| |||| || || |||
Sbjct 49792 GCGGCATCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAACGACGGTGTTGTT 49736
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116
|| || || ||||| || ||||| || || | ||||||| | | |||| |||||||||
Sbjct 49735 CGGTTACCCTGGTCATTGGCAATGATCTCAATTCGGTCGTCTCGGTAGACACCGACGCAC 49676
Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142
|| || || || || || ||||||||
Sbjct 49675 GAGTAGGTCGTGCCCAAGTCAATACC 49650
Score = 109 bits (120), Expect = 7e-19
Identities = 523/829 (63%), Gaps = 7/829 (1%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| || || |||||||| || || || | ||| ||||| || || || ||
Sbjct 51324 TCATCCTCTTCCTTATACTTCTCGGCTTCAGCCAACATACGCTCAATCTCCTCCTTGGAC 51265
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
|| | ||||| || || || || || ||||| | ||| || || | | |||| || |
Sbjct 51264 AAGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTGGACTTGCCAGTGCCCTTCTCAACG 51205
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| || |||| || || || ||||| | ||||| | || | |||||| || |
Sbjct 51204 GCAGAGACGTTCATGATTCCGTTGGCATCGAGGTCGAAAGTGACCTCAATTTGGGGAACA 51145
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || | | || ||||| || | || || | || |||| |||| ||| |
Sbjct 51144 CCACGGGGGACAGGGGGGATACCGGTAAGCTCGAACTTGCCGAGTAGGTTGTTGTCCTTG 51085
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | ||| ||||| || ||||| | ||| ||| | || || || ||
Sbjct 51084 GTGCGTTGACGCTCACCCTCGTAGACCTGAATGAGCACACCGGGCTGGTTGTCGGAGAAG 51025
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | ||||| | || || || || || | ||||| | | ||||
Sbjct 51024 GTGGAGAAGACCTCAGACTTCTTGGTAGGGATAGTAGTGTTGCGGGGAATGAGCTTGGTC 50965
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988
|| |||||||| ||| |||| || ||||| || | | || || | || || |
Sbjct 50964 ATCATACCACCAGCAGTCTCGATACCGAGAGAAAGGGCGGCAACATCGAGAAGCAAGATC 50905
Query 6989 TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045
|| | || | | | || || | | ||| || || ||||| | || ||
Sbjct 50904 TCGTTGGTGGACTTGGAGCTGGTGTCGCCAGACAGGATAGCAGCCTGGACAGCAGCGCCA 50845
Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105
|| || || |||||||| ||||| || | || || | || || ||||| || || ||
Sbjct 50844 TAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCG 50785
Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165
| | | | || | ||||| || || || |||||||| | || || || |
Sbjct 50784 GTAATGAGCTTCTGGACACGGGGGATACGGGTGGAACCACCGACAAGGACAATCTCGTGG 50725
Query 7166 ACTTTCGATTTATCGATCTTTGAGTCT--CGAAGTGTTTTTTCGACAGGTTCCATACATT 7223
|| | || || |||||||| | ||| | || | || || || | ||
Sbjct 50724 ACCTGAGACTTGTCGATCTTGGCGTCAGCCNAAAC--TCGGTCAACGGGCTGGATGGTGG 50667
Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283
||||| | |||| || || ||||| || | ||||||||||| | ||| || || |
Sbjct 50666 ATCGGAAGAGGTCCTGGCAGAGCTCCTCGAACCTGGCACGGGTAATAGCTGTGTAAAAGT 50607
Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343
| | ||| ||||| | || || || ||||| | ||||| || | |||||| | || |
Sbjct 50606 CGATGCCCTCGTAAAGAGAGTCGATCTCAATAGAGGTTTGGGCAGACGAAGACAGAGTAC 50547
Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392
|||| || ||||| || || || || | ||| || |||||||| | |||
Sbjct 50546 GCTTGGCACGCTCGCAGGCAGTACGAAGACGTCGGAGGGCACGAGCGTT 50498
>seq1221
Length=30703
Score = 158 bits (174), Expect = 2e-33
Identities = 368/545 (68%), Gaps = 15/545 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATG-GATGTATAGAAATCAACGCCGTCGTATAACGA 7302
|| ||||| ||||| || ||||| || || | | |||| || |||||||| | | |||
Sbjct 11139 AGGTCCTCGAAACGGGCCCGGGTGATCTGAAGGA-AGAAGTCCTCGCCGTCGAAGAGCGA 11081
Query 7303 ATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360
||||| || ||||| || || || ||| | ||| |||| ||| || ||||| ||
Sbjct 11080 GTCAATCTCGATGGTGGTCTGGGCGCCGTTGGAGAGG--GTTCTCTTGGCACGCTCGCAA 11023
Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420
|| ||||| | | || || ||||| |||| || || || || ||||| || |
Sbjct 11022 GCGGTTCGGAGTCTGCGGAGAGCACGGGGGTCGCCAGATATGTCCTTCTTGGTCTTCCTC 10963
Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
| ||||| | | |||| || || | | |||||||||| ||||| | ||
Sbjct 10962 TGGAACTCCTTCTTGCAGTGGTCTAGAAGATTGGTGTCGAAATCTTGGCCACCTAGATGA 10903
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
||||| || ||||| || ||||| |||| || || | ||||| | | || |||
Sbjct 10902 GTATCACCAGCGGTAGCCTTGACGGTGAAGACGCCACCCTGGATGTTCAGGAGGGACACA 10843
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAG-----TACGTTCGTATCGTCGTCTTTGT 7595
||||| ||||||||||| || || | || || |||| || | | ||| | ||||
Sbjct 10842 TCAAAAGTACCACCACCAAGATCGTAGATCAGCACATTACGCTCCT-TGTTCGAC-TTGT 10785
Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAG 7654
| | |||||||| || ||||| || || || ||||| ||||| ||||||| ||||
Sbjct 10784 TTGACCCAAGACCGTAGGCAATAGCAGCGGCAGTAGGTTCGTTAATGATACGAAGGACA- 10726
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || || | ||| | | ||||| || || || || || || ||||| |||||
Sbjct 10725 TTAAGACCGGAAATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAA 10666
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|||||||| || | ||| || | | || ||||| ||||| | | || || || ||
Sbjct 10665 GCCGGGACGGTGATGACGGCCTTCTCCACCTTCTTTCCGAGCTTGGTCTCGGCAATCTCC 10606
Query 7775 TTCAT 7779
|||||
Sbjct 10605 TTCAT 10601
>seq1336
Length=25880
Score = 123 bits (136), Expect = 3e-23
Identities = 360/550 (65%), Gaps = 17/550 (3%)
Strand=Plus/Plus
Query 105453 ACCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAG 105512
||| |||| ||| || |||||||| || |||||||||| | |||||| || || | |||
Sbjct 5312 ACCCTCAGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAG 5371
Query 105513 ACCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCAT 105572
||| || | || || | || || ||| | || | ||||| ||||||||
Sbjct 5372 ACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCAT 5431
Query 105573 GAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACC 105632
||||| ||| |||||||| | |||| |||||||| ||| | | || || | |||
Sbjct 5432 GAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACC 5491
Query 105633 TTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGAC 105692
|| ||| || | || || || || | | ||| | |||||| ||||| | || |
Sbjct 5492 GTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAAT 5551
Query 105693 TGCAATAGACCC------TTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTT 105746
|||| || || |||| | || |||||| ||| || | ||||| |||
Sbjct 5552 AGCAAAAGCGCCCGGTCGTTTATTA---CCACCTTGATCGACGTAGCGGGCGGTGTTGTT 5608
Query 105747 ATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGA 105806
| || |||||||| || | || |||| || || ||||| || || ||| | ||
Sbjct 5609 GAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGA 5668
Query 105807 TTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGAT 105863
| ||||| | | || || | | ||||| || |||||| ||| | | ||
Sbjct 5669 GCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGCCAGCCATCTTGGAAATCAT 5728
Query 105864 ACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAAT 105923
| ||||| ||| | || || ||||| || || |||||||| || || | | |
Sbjct 5729 A---GCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGAC 5785
Query 105924 CAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTG 105982
|| ||| || || ||||| || || ||| || || |||||||||||||| || || | |
Sbjct 5786 CAAGAAGCAGGAAGACATCTGAGG-CTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAG 5844
Query 105983 CATGAATGAA 105992
|||| ||||
Sbjct 5845 CATGGGTGAA 5854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635118835017560
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