Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq873 282 5e-71 seq1221 158 2e-33 seq1336 123 3e-23 >seq873 Length=51870 Score = 282 bits (312), Expect = 5e-71 Identities = 476/686 (69%), Gaps = 6/686 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 50329 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCC 50270 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || || || ||| Sbjct 50269 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATCAGAACG 50210 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| ||||| || || || || || || Sbjct 50209 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAAGCGATGGCGGCAGCGGTAGGCTCG 50150 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| ||| || || ||||| | ||||| || || ||||| || Sbjct 50149 TTGATGATACGGAGAACGTTGAGACCGGCAATGAGACCGGCATCCTTGGTGGCTTGACGC 50090 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| ||||| || | ||| |||| |||| | ||| || Sbjct 50089 TGGGCGTCGTTGAAGTAGGCAGGGACGGTGATGACAGCGTTGTTGACGGTACCACCCAGG 50030 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || ||||| || || ||||| || | | Sbjct 50029 TAAGCCTCGGCGGTCTCGCGCATCTTGGTGAGGACCATGGAAGAGATCTCCTCGGGGGTG 49970 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || | || || || | || || || |||| | | | Sbjct 49969 AAGGTCTTGGTCTCGCCCTTGTACTCGACCTCGACGATAGGCTT-GCCGC--CCTTGTCG 49913 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || | ||| | | | | ||||| ||| | || |||| |||||| | |||||| | Sbjct 49912 ATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGAACCTCTTGGTCGGCAAACTTGCGG 49853 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| || || || |||||||| ||||||||||| |||||||| Sbjct 49852 CCAATCAGACGCTTGGCGTCGAAGACTGTGTTAGACGGGTTCATGGCGACCTGGTTCTTG 49793 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || || || || || || ||| |||| || || ||| Sbjct 49792 GCGGCATCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAACGACGGTGTTGTT 49736 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || ||||| || ||||| || || | ||||||| | | |||| ||||||||| Sbjct 49735 CGGTTACCCTGGTCATTGGCAATGATCTCAATTCGGTCGTCTCGGTAGACACCGACGCAC 49676 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || || || || || || |||||||| Sbjct 49675 GAGTAGGTCGTGCCCAAGTCAATACC 49650 Score = 109 bits (120), Expect = 7e-19 Identities = 523/829 (63%), Gaps = 7/829 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || |||||||| || || || | ||| ||||| || || || || Sbjct 51324 TCATCCTCTTCCTTATACTTCTCGGCTTCAGCCAACATACGCTCAATCTCCTCCTTGGAC 51265 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || || ||||| | ||| || || | | |||| || | Sbjct 51264 AAGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTGGACTTGCCAGTGCCCTTCTCAACG 51205 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| || || || ||||| | ||||| | || | |||||| || | Sbjct 51204 GCAGAGACGTTCATGATTCCGTTGGCATCGAGGTCGAAAGTGACCTCAATTTGGGGAACA 51145 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || | | || ||||| || | || || | || |||| |||| ||| | Sbjct 51144 CCACGGGGGACAGGGGGGATACCGGTAAGCTCGAACTTGCCGAGTAGGTTGTTGTCCTTG 51085 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || ||||| | ||| ||| | || || || || Sbjct 51084 GTGCGTTGACGCTCACCCTCGTAGACCTGAATGAGCACACCGGGCTGGTTGTCGGAGAAG 51025 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | ||||| | | |||| Sbjct 51024 GTGGAGAAGACCTCAGACTTCTTGGTAGGGATAGTAGTGTTGCGGGGAATGAGCTTGGTC 50965 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| ||| |||| || ||||| || | | || || | || || | Sbjct 50964 ATCATACCACCAGCAGTCTCGATACCGAGAGAAAGGGCGGCAACATCGAGAAGCAAGATC 50905 Query 6989 TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | || | | | || || | | ||| || || ||||| | || || Sbjct 50904 TCGTTGGTGGACTTGGAGCTGGTGTCGCCAGACAGGATAGCAGCCTGGACAGCAGCGCCA 50845 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || | || || ||||| || || || Sbjct 50844 TAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCG 50785 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | || | ||||| || || || |||||||| | || || || | Sbjct 50784 GTAATGAGCTTCTGGACACGGGGGATACGGGTGGAACCACCGACAAGGACAATCTCGTGG 50725 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCT--CGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 || | || || |||||||| | ||| | || | || || || | || Sbjct 50724 ACCTGAGACTTGTCGATCTTGGCGTCAGCCNAAAC--TCGGTCAACGGGCTGGATGGTGG 50667 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 ||||| | |||| || || ||||| || | ||||||||||| | ||| || || | Sbjct 50666 ATCGGAAGAGGTCCTGGCAGAGCTCCTCGAACCTGGCACGGGTAATAGCTGTGTAAAAGT 50607 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 | | ||| ||||| | || || || ||||| | ||||| || | |||||| | || | Sbjct 50606 CGATGCCCTCGTAAAGAGAGTCGATCTCAATAGAGGTTTGGGCAGACGAAGACAGAGTAC 50547 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 |||| || ||||| || || || || | ||| || |||||||| | ||| Sbjct 50546 GCTTGGCACGCTCGCAGGCAGTACGAAGACGTCGGAGGGCACGAGCGTT 50498 >seq1221 Length=30703 Score = 158 bits (174), Expect = 2e-33 Identities = 368/545 (68%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATG-GATGTATAGAAATCAACGCCGTCGTATAACGA 7302 || ||||| ||||| || ||||| || || | | |||| || |||||||| | | ||| Sbjct 11139 AGGTCCTCGAAACGGGCCCGGGTGATCTGAAGGA-AGAAGTCCTCGCCGTCGAAGAGCGA 11081 Query 7303 ATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 ||||| || ||||| || || || ||| | ||| |||| ||| || ||||| || Sbjct 11080 GTCAATCTCGATGGTGGTCTGGGCGCCGTTGGAGAGG--GTTCTCTTGGCACGCTCGCAA 11023 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || ||||| | | || || ||||| |||| || || || || ||||| || | Sbjct 11022 GCGGTTCGGAGTCTGCGGAGAGCACGGGGGTCGCCAGATATGTCCTTCTTGGTCTTCCTC 10963 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| || || | | |||||||||| ||||| | || Sbjct 10962 TGGAACTCCTTCTTGCAGTGGTCTAGAAGATTGGTGTCGAAATCTTGGCCACCTAGATGA 10903 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || ||||| || ||||| |||| || || | ||||| | | || ||| Sbjct 10902 GTATCACCAGCGGTAGCCTTGACGGTGAAGACGCCACCCTGGATGTTCAGGAGGGACACA 10843 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAG-----TACGTTCGTATCGTCGTCTTTGT 7595 ||||| ||||||||||| || || | || || |||| || | | ||| | |||| Sbjct 10842 TCAAAAGTACCACCACCAAGATCGTAGATCAGCACATTACGCTCCT-TGTTCGAC-TTGT 10785 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAG 7654 | | |||||||| || ||||| || || || ||||| ||||| ||||||| |||| Sbjct 10784 TTGACCCAAGACCGTAGGCAATAGCAGCGGCAGTAGGTTCGTTAATGATACGAAGGACA- 10726 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || | ||| | | ||||| || || || || || || ||||| ||||| Sbjct 10725 TTAAGACCGGAAATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAA 10666 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 |||||||| || | ||| || | | || ||||| ||||| | | || || || || Sbjct 10665 GCCGGGACGGTGATGACGGCCTTCTCCACCTTCTTTCCGAGCTTGGTCTCGGCAATCTCC 10606 Query 7775 TTCAT 7779 ||||| Sbjct 10605 TTCAT 10601 >seq1336 Length=25880 Score = 123 bits (136), Expect = 3e-23 Identities = 360/550 (65%), Gaps = 17/550 (3%) Strand=Plus/Plus Query 105453 ACCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAG 105512 ||| |||| ||| || |||||||| || |||||||||| | |||||| || || | ||| Sbjct 5312 ACCCTCAGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAG 5371 Query 105513 ACCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCAT 105572 ||| || | || || | || || ||| | || | ||||| |||||||| Sbjct 5372 ACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCAT 5431 Query 105573 GAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACC 105632 ||||| ||| |||||||| | |||| |||||||| ||| | | || || | ||| Sbjct 5432 GAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACC 5491 Query 105633 TTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGAC 105692 || ||| || | || || || || | | ||| | |||||| ||||| | || | Sbjct 5492 GTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAAT 5551 Query 105693 TGCAATAGACCC------TTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTT 105746 |||| || || |||| | || |||||| ||| || | ||||| ||| Sbjct 5552 AGCAAAAGCGCCCGGTCGTTTATTA---CCACCTTGATCGACGTAGCGGGCGGTGTTGTT 5608 Query 105747 ATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGA 105806 | || |||||||| || | || |||| || || ||||| || || ||| | || Sbjct 5609 GAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGA 5668 Query 105807 TTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGAT 105863 | ||||| | | || || | | ||||| || |||||| ||| | | || Sbjct 5669 GCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGCCAGCCATCTTGGAAATCAT 5728 Query 105864 ACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAAT 105923 | ||||| ||| | || || ||||| || || |||||||| || || | | | Sbjct 5729 A---GCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGAC 5785 Query 105924 CAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTG 105982 || ||| || || ||||| || || ||| || || |||||||||||||| || || | | Sbjct 5786 CAAGAAGCAGGAAGACATCTGAGG-CTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAG 5844 Query 105983 CATGAATGAA 105992 |||| |||| Sbjct 5845 CATGGGTGAA 5854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635118835017560