Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1336 255 7e-63 seq1008 109 7e-19 >seq1336 Length=25880 Score = 255 bits (282), Expect = 7e-63 Identities = 905/1392 (65%), Gaps = 29/1392 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || ||| | ||||| || || ||| |||| || Sbjct 5947 CCTCAGCACATGATCATGCGTGTGGCGGTAGGTATTTGGGGAGACGATGTTGAGAAAGTC 5888 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||||| | || |||| ||| || | || || || || Sbjct 5887 CTCGAGACCTACAACCTCATGTCCC-TCAAATACTTCACCCATGCTTCCCCTACACTGTT 5829 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| ||||| || || || || ||||| || ||| | | | | || || || Sbjct 5828 CAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAAGATGA 5769 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 | || | |||||||| | ||| || | |||||| || || ||| |||||| Sbjct 5768 TAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATGGCTGG 5709 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || || || || | | ||| | || | |||| ||| ||| ||||| || Sbjct 5708 CGGAATTGGCCTGAATGTACATCGTATCCGTGCCACGGGCTCTTACATTGCCGGTACCAA 5649 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| || |||| || | || ||| | ||||| || ||| ||| || ||||| || Sbjct 5648 TGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCCGCTACGT 5589 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 | |||| ||| | || ||| || | || | || || || || |||||| | Sbjct 5588 CGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGTGGCACTC 5529 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-C 112086 |||| | | |||||||| || |||| ||||| ||| | ||||| | || ||| | Sbjct 5528 GGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTCG-TGCTC 5470 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || |||||| || || |||||||| ||||| |||||||| |||||||| ||| | Sbjct 5469 GTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGAAGAACG 5410 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGG 112206 ||| ||| | || | || || || || | ||||| |||||| | ||||| | Sbjct 5409 GCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACGGTGATG 5350 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGCC 112264 ||||||||||||||||| ||||| || | || ||| ||| | || |||| | Sbjct 5349 AGTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTC--GCGGCCGCCAGACGATAAA 5292 Query 112265 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 ||| | || | | ||| | || ||||| || |||| || |||||||| | || | | Sbjct 5291 AGC-CCAGAAGCTCTGGTATGCCATTCTAGAGGCTCAGACAGAGACTGGAAACCCCTTCA 5233 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 |||| ||||| ||| | || | ||||| || || ||||| ||||| || | Sbjct 5232 TGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAACCTGGGTACAATTCGTA 5173 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 |||| || ||||| || || ||| | || | | | |||||| ||||| || | Sbjct 5172 GTTCTAATCTCTGCACTGAGATCATTGAGTACAGTGCTCCAGATGAAGTTGCTGTTTGCA 5113 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGATTA 112501 || | ||||| || ||| | || | ||||| | | | || || | | ||||| Sbjct 5112 ACTTGGCATCCATGGCTTTACCGTCCTTCGTGGA-CTATA-ACTCGGAAAGCTATGATTT 5055 Query 112502 TGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAG 112561 | |||| || ||||| || || || ||| || || |||||||| || || Sbjct 5054 TCAAAAGCTGCACGAGGTAACCCAAGTTGTTGTGCGCAATCTGAACAGAGTCATCGACGC 4995 Query 112562 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 ||| || || || |||| || ||||| || ||| | ||||| || ||||| Sbjct 4994 AAACCACTATCCTGTCCCTGAG---GCACGTAACAGCAACATGCGCCACCGCCCTATTGG 4938 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 112678 |||||||||||| ||||| || ||| ||| || | ||| | ||||| || Sbjct 4937 TCTCGGTGTCCAGGGTCTAGCCGATACCTTCCTTGCTCTCCGCATGCCTTTTGAATCGCC 4878 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA-GG 112737 |||||| | |||| || || |||||||| ||||| || |||||| |||| | Sbjct 4877 CGAAGCTCGACAGCTCAACAAGCAGATTTTTGAGACCATGTACCATGCCGCT-TTGACTG 4819 Query 112738 CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | |||| | || ||| || ||| | || || | ||||| ||||| | || Sbjct 4818 CATCAATGGAGATTGCTAAGGAAGAAGGTACTTACTCTACTTACGAGGGCTCTCCTGTTT 4759 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTG 112855 | ||||| | ||||| | ||| |||| |||| || | || || || | ||||| Sbjct 4758 CTCAAGGCATTCTTCAGTATGACATGT-GGAATGTCACTCC-CTCTGATCTTTGGGACTG 4701 Query 112856 GGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || | |||||||| | ||||| | | ||| | || |||||||| | ||||| || Sbjct 4700 GGCTACCCTCAAGGAGCAGATCAAACAACATGGTGTACGCAACAGTCTCCTCATGGCTCC 4641 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||||| || ||| ||| | || || |||| ||||| |||||||| || |||||||| Sbjct 4640 CATGCCGACCGCCAGTACCTCGCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTACAC 4581 Query 112976 GACGAACATCTA 112987 | ||||||| || Sbjct 4580 GTCGAACATTTA 4569 >seq1008 Length=41606 Score = 109 bits (120), Expect = 7e-19 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAAAGTCGCGTTCCTTT 102176 |||| ||||| || || |||||| | |||||| ||| || || ||| || || Sbjct 1904 ATTCGCAAGAAGGCTGACTGGGCTCTAAAGTGGATTGCTGATCGCAATTCGACTT---TT 1960 Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || | || || | || || || ||||| |||||||||||| ||| | ||| | Sbjct 1961 GCCCAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCC 2020 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 |||| | |||||||||||||| ||||| ||||| || || |||||| |||||||| Sbjct 2021 TCTATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTC 2080 Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| |||||||| || |||||| || ||||| Sbjct 2081 ATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728751426480