Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1336 194 2e-44 seq883 125 8e-24 >seq1336 Length=25880 Score = 194 bits (214), Expect = 2e-44 Identities = 1051/1663 (63%), Gaps = 33/1663 (2%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 || || |||||||| ||||| ||||||||| || ||||| | | | || || | Sbjct 4323 GATTGTGACTGATCAATGAAAGCACCACGATCGGCAGCCATTTGCACTA----CTGTTCG 4378 Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGA- 109621 || ||||||||||||||||||||| || |||| || | |||||| | | || Sbjct 4379 CTGAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTGACTTCCGCCGGAATG-CTAGGAA 4437 Query 109622 TGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGAC 109681 | | |||| |||||||| | | ||| | | |||||| | | ||||| |||| Sbjct 4438 TACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTCTTCATATTATCAGACCATAGAC 4497 Query 109682 CGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAG 109739 | | | ||||| | | ||| | || ||||| || |||||||| || | Sbjct 4498 CTAGATCGACCAGATCCTTCAGAAGC--CATGGATTGACGACTTGGAATTCACCGGCTAA 4555 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || || ||| ||||| | ||||||||| ||||| || || || ||||| || || Sbjct 4556 AACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAAT 4615 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT-TCG 109858 || | || || || ||||||||||||||||| |||||||| || | ||| | | | Sbjct 4616 CTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTG 4675 Query 109859 TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCAT 109918 | || | | |||| | | |||| || || || || | ||| || | Sbjct 4676 T-TTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGATCAG---AGGGAGTGACA---T 4728 Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978 |||||| || ||||| | || | || | ||||||| |||| | || | ||| | Sbjct 4729 TCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAG 4788 Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038 || || ||| || | ||| ||| || | || ||||| ||||| ||||||| Sbjct 4789 TACCTTCTTCCTTAGCAATCTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTCTCAA 4848 Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098 |||| || || | | |||| || | || || || | | | || | Sbjct 4849 AAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGA 4908 Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158 | ||| ||||||||||| |||||||||||||| ||||| || |||||| | | Sbjct 4909 AGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTAC 4968 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | || || || || ||| ||||||||| | || ||||| | ||| Sbjct 4969 GTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAA 5028 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATT 110278 | || | || || || || | |||| | ||| || | | | || | Sbjct 5029 CTTGGGTTACCTCGTGCAGCTTTTGAAAATCATAGCTTTCCGAGTTATAGTCCACGAAGG 5088 Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 || | ||| || || || | ||||| |||| | || ||| | |||| || | Sbjct 5089 ACGGTAAAGCCATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAA 5148 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTG- 110397 || || || || | || ||||| ||| ||||| ||||||||| || ||| Sbjct 5149 TGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTTGCTCTTGC 5208 Query 110398 GAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGA 110457 || | || || ||||| ||||||||| | ||| | ||||| || ||||| | || ||| Sbjct 5209 GATTGGCGTGG-TCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGA 5267 Query 110458 ATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTA 110516 ||||| | ||| | | || | ||| | || | || |||| || | || || Sbjct 5268 ATGGCATACCAGAGCTTCTG-GGCTTTTATCGTCTGGCGGCCGCGACCCTCAGCTTCATA 5326 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 ||| ||| | | | ||||| || | ||||| ||||| | |||||| || || Sbjct 5327 CTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTT 5386 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 || || | || | ||| | || || |||||| | ||||||||||| |||||||| Sbjct 5387 CGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAAT 5446 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||| | || ||| |||||||| |||| | || || | ||| ||||| || || Sbjct 5447 CCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAG 5506 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTT 110756 |||| || || | | |||||||||||| |||||||| || | ||| | | ||| Sbjct 5507 ATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGG 5566 Query 110757 ACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813 || | ||| | || | || ||||| || ||| |||||||| | | ||| || Sbjct 5567 TCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGG 5626 Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873 | || |||| || ||||| ||||| ||| || ||||||| || Sbjct 5627 GACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACG 5686 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGT 110933 || | || || ||||| || || ||| ||| ||| ||||| | | || || Sbjct 5687 ATGTACATTCAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGT 5746 Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993 ||||||| || ||||| ||| | || || | | | ||||| ||||||||||| Sbjct 5747 GTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTG 5806 Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTT--GG 111051 ||| | || ||||| |||||||| |||||||| | ||||| ||| || || || Sbjct 5807 AGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGA--AGTATTTGAGG 5864 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111 ||||| |||||| || ||||| | ||||| | || |||||| | || Sbjct 5865 GACATGAGGTTGTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCC 5924 Query 111112 ACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCAT 111154 || ||||||| ||| | ||||| | |||| | |||||||| Sbjct 5925 ACACGCATGATCATGTGCTGAGGTCTCTCGACAATCTTTCCAT 5967 >seq883 Length=50859 Score = 125 bits (138), Expect = 8e-24 Identities = 281/416 (68%), Gaps = 21/416 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| ||||| || || || | | ||| | ||||| | ||| || | ||| ||| | Sbjct 49050 CGATCAAAACGGCCAGGTCGCATCAAAGCCTGGTCAAGCACATCTACTCTGTTGGTACCA 49109 Query 11563 GCAATGACTACAA--TGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| ||| || | ||| || || | | |||||||||||| ||||| || | ||| | Sbjct 49110 GCAAGGACAACGACCTGCTCGT-TCGTATT-GAAACCGTCCATCTCTGTAAGGATCTGAT 49167 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCC----GAACGCTTCTTA 11676 ||| || || || |||||||| | || ||| | ||| ||||| || Sbjct 49168 TGAGGGTAGCCTCCCGTTCATCGTTACCGC-CAAACCTCTGGCCTTCAGAACGAGCTCTA 49226 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 |||| ||||| || |||||||| || | ||| || || ||| ||| || Sbjct 49227 CCGATGGCGTCGATTTCATCGATAAAGATGATGCATGGCGCGTTCTTACGCGCAGTAGAA 49286 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 ||||| || || || | | || || || || ||||||||||| || || | || Sbjct 49287 AAAAGGTCGCGCACTCTCGAGGCACCTACGCCGACGAACATCTCCACAAATT------CA 49340 Query 11797 GAACA-CTGAATG-----AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 |||| |||| | ||||| || |||||| ||||| ||||| || || || Sbjct 49341 GAACCGCTGACGGTAAAAAAGGGCACGCCAGACTCGCCAGCAGTGGCTTTTGCCAGCAGC 49400 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||| |||||||||| ||| || |||| |||||||| |||||||||||||| Sbjct 49401 GTCTTACCAGTACCAGGTGGACCTGCAAGAATAGCGCCACGAGGGATCTTGGCACC 49456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963049890200