Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1336 217 2e-51 >seq1336 Length=25880 Score = 217 bits (240), Expect = 2e-51 Identities = 895/1393 (64%), Gaps = 29/1393 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||||| ||||||||| || |||||||| ||||| |||| || || | ||| | Sbjct 4569 TAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACTG 4628 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || ||||| | |||||||| || | ||| | || ||||| | ||| Sbjct 4629 GCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGATCTGCTCC 4688 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 ||||| | ||||||| | | | || || | || |||| |||| ||| | |||| Sbjct 4689 TTGAGGGTAGCCCAGTCCCAAAGATCAGAG-GGAGTGACATTCC-ACATGTCATACTGAA 4746 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | ||||| || ||||| ||||| | || || | ||||| | | ||| | Sbjct 4747 GAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAA 4806 Query 106173 ATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 || | | | || || | || || |||||||| ||||| || | || | | Sbjct 4807 TCTCCATTGAT-GCAGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGC 4865 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 | ||||| || ||||| | |||| || || ||| || ||||| Sbjct 4866 TGTCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCC 4925 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACG 106348 || ||||| | ||||||||| | ||| ||||| || || || || |||| || Sbjct 4926 TGGACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTACGTGC---CTCAGGGACA 4982 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 ||||| ||| ||| ||||||| ||| ||||| ||||| | || | || Sbjct 4983 GGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCG 5042 Query 106409 TGAAGTTTTTCATAATCAAAAGTG--CGAGTC-TCTTCATTGACATACTTTGGAAGGGCG 106465 || || |||| | ||||| | | ||||| | || || || || | || Sbjct 5043 TGCAGCTTTTGAAAATCATAGCTTTCCGAGTTATAGTCCACGAAGGAC---GGTAAAGCC 5099 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || |||||||| ||||||||||| ||||| | | ||||||| | || || || Sbjct 5100 ATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTG 5159 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 || | || ||||| ||| || |||| ||||| ||||| ||||| ||| Sbjct 5160 CAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGG 5219 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC 106645 ||||||||||||||| |||| | || ||||| ||||| | || ||||| || | ||| Sbjct 5220 TCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAG 5279 Query 106646 A-CATCGGCGGCTGGTA--CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 106702 | | || | |||| || ||||| | | || ||||| || || ||||| |||| Sbjct 5280 AGCTTCTG-GGCTTTTATCGTCTGGCG--GCCGCGACCCTCAGCTTCATACTTCTCGTAG 5336 Query 106703 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 106762 |||||||||||||| ||||| | |||| ||||| | || || || || | Sbjct 5337 AGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATC 5396 Query 106763 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 106822 || | ||| || || |||||| || |||||||| || || |||||||| |||| | Sbjct 5397 AGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCT 5456 Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882 ||||| || | | ||| | || || | ||| ||||| ||| | || |||||| Sbjct 5457 AGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAAC 5516 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGC 106939 || | | ||||| |||||| || || || || | || | || ||| ||| | Sbjct 5517 TCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTA 5576 Query 106940 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 106999 ||| |||||| || ||||| || ||| ||| || ||||| | ||| || | || ||| Sbjct 5577 CCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCA 5636 Query 107000 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 107059 | || ||||| || || ||| ||| |||| | | | ||| | | | Sbjct 5637 TTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATTC 5696 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 107119 | ||||| || |||||| ||| || || ||||| |||| || |||| || Sbjct 5697 AGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATG 5756 Query 107120 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 107179 || | || || || || || ||| | |||||| |||||||| || || Sbjct 5757 CCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGG 5816 Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTC 107238 || ||||||||||| || || || | || || |||| || | ||||||| || Sbjct 5817 GTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAA-GTATTTGAGGGACATGAGGTT 5875 Query 107239 GTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAA 107298 ||| ||||| | ||| |||| || || || || || | ||||||||||| | Sbjct 5876 GTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGAT 5935 Query 107299 CATGTATTGGGGT 107311 ||||| || ||| Sbjct 5936 CATGTGCTGAGGT 5948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967827797160