Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1413 192 1e-43 seq1001 113 1e-19 seq1368 89.7 1e-12 >seq1413 Length=23416 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || |||||||||||| ||||||| |||||||| Sbjct 19062 ACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCC 19121 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 19122 AGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 19181 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| |||||||| || || ||||||||| | ||| | |||||| Sbjct 19182 ATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTT 19241 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || ||||| | ||||| Sbjct 19242 CCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || ||||| ||||| ||| ||||||| || || || ||||| Sbjct 19295 GTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCCTCCAGCTG 19354 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||||||||| ||||| || ||||| || ||||| |||||||| || || Sbjct 19355 CTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGATCTT 19414 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || |||||||| ||| ||| ||||| || |||| ||||||||| || Sbjct 19415 GCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTTTCCGGT 19474 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 19475 GAGGGTCTTGACGAAGATTTGCAT 19498 Score = 136 bits (150), Expect = 9e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| || ||||| |||||| ||| || || || ||||| || | |||| || | |||| Sbjct 19797 CAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAG-GTGCGGCCAT 19855 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| || ||||| || ||||| || | |||||| ||||||||||| ||||| || |||| Sbjct 19856 CTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGT 19915 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 | ||||| || |||||| || || || ||||||||| ||||| || | ||| | | Sbjct 19916 CCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGG 19975 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || | ||| || ||||| | ||||| Sbjct 19976 TCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| || || || ||||| || || |||| || || ||| Sbjct 19518 ACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCGTCCTCG 19577 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || | || || ||||| || || ||||| |||||||| ||| Sbjct 19578 AGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGA 19637 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||||||| ||| || ||||| || | ||||||| Sbjct 19638 ATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATCGTCTTT 19697 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || |||| || || |||| Sbjct 19698 CCAGTCAGGGTCTTGACGA 19716 >seq1001 Length=42108 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| |||| || || | || || ||| Sbjct 35592 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 35533 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| ||||| || || ||||| || ||||| || Sbjct 35532 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 35473 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || || |||||||| ||| ||||| || ||||| | ||| Sbjct 35472 ATCTTGGACTTGACATTGTCGATGGTGTCGCTCGA---CTCCACCTCGAGGGTGATAGTC 35416 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 35415 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384 >seq1368 Length=24850 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || |||| || || || |||||||| || ||||||||| Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || || || || || || || || ||||| || || || ||| || || || Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 8146 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 |||||||| || || || || ||||| | ||||| || || | || || ||||| Sbjct 8145 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 8086 Query 195133 ACTTGCA 195139 | |||| Sbjct 8085 ATCTGCA 8079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109456595405153