Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 120 2e-22
seq1001 104 2e-17
seq1368 91.5 1e-13
>seq1413
Length=23416
Score = 120 bits (132), Expect = 2e-22
Identities = 159/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||| ||| | ||||| || ||||| ||||| ||||| || | | | || ||||
Sbjct 19797 CAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 19856
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
||||| || ||||| || || || | ||||||||||||| | || | |||||||||||
Sbjct 19857 TTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTC 19916
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTA 34944
|||||| ||||| || | ||||| | ||| | ||| || || | ||| |
Sbjct 19917 CTGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGA 19972
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||| || || ||||||||||| || |||||||||||
Sbjct 19973 TGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009
>seq1001
Length=42108
Score = 104 bits (114), Expect = 2e-17
Identities = 145/201 (72%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||| ||||| ||||| || ||| | || | || || ||||| || |||
Sbjct 35580 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 35521
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || || ||||||||||| | || | ||||||||||| ||||| |||
Sbjct 35520 GCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 35461
Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || | ||||| || | | ||| || |||| ||| || || || ||||||||
Sbjct 35460 AC--AT--TGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAG 35405
Query 34961 AGTCTTCACAAAGATCTGCAT 34981
||||| || |||||||||||
Sbjct 35404 GGTCTTGACGAAGATCTGCAT 35384
>seq1368
Length=24850
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/191 (71%), Gaps = 8/191 (4%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| || ||| |||| | || || ||||| || ||||| || ||
Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || ||||| || | || | ||||||||||| ||||| || || || |
Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCAC--AT--T 8150
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || ||| || |||| ||| ||||| || |||||||| ||||| ||
Sbjct 8149 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 8090
Query 34970 AAAGATCTGCA 34980
||||||||||
Sbjct 8089 GAAGATCTGCA 8079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324626640565752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |