Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1336 159 4e-34 >seq1336 Length=25880 Score = 159 bits (176), Expect = 4e-34 Identities = 445/679 (66%), Gaps = 4/679 (1%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||| ||||| || || |||| | | |||| ||| || || || ||||||| || | Sbjct 5343 TCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTC 5402 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 || | | || | |||| |||| || | ||| || |||||||| |||| || Sbjct 5403 CAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAG 5462 Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305 | || | || | | ||| || || || ||| || || || || || || | | Sbjct 5463 AGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAAT 5522 Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 | ||| | ||||| ||||| | || || || | | || |||||||||||||| ||| Sbjct 5523 ACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCT 5582 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 ||||| | || | ||| || ||||| | || | |||||| ||||| || ||||| || Sbjct 5583 TGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGAC 5642 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA-CTA-ATTGAAATAC 48483 | |||||||| || | ||| ||| || | || | ||| | || ||| | | Sbjct 5643 GTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATT--CAGGC 5700 Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543 | || || || ||||| || || || | |||||| ||||||||| |||||||| || | Sbjct 5701 CAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCT 5760 Query 48544 CTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTC 48603 | |||||||||||| |||| | | | || || |||||| || || || |||| Sbjct 5761 CAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTC 5820 Query 48604 CTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATG 48663 | | ||| || | ||| || || ||||| | || |||| || | | || || | Sbjct 5821 CAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGG 5880 Query 48664 TTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATAT 48723 | || | || || | ||| | ||||||| | |||||||| | ||| | Sbjct 5881 TCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATGT 5940 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 |||||||| || ||||| || ||| || |||| |||||| ||| |||| || | Sbjct 5941 GCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGTCT 6000 Query 48784 TAAAACCAAAATAGTTGTA 48802 | || || || || | ||| Sbjct 6001 TGAAGCCGAAGTATTGGTA 6019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096440632760