Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 95.1 9e-15
seq1001 82.4 6e-11
>seq1413
Length=23416
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616
|||||| |||||||| ||| || ||||| ||||| || |||| |||| |||| ||
Sbjct 19289 CACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCCTC 19348
Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676
|| ||||||||| || || || |||||||||||||| | || | || ||||||||
Sbjct 19349 CAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTG 19408
Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736
||||| ||||| | | | ||||| | || || || | |||||||| ||
Sbjct 19409 GATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTT 19468
Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| || | || || || || || |||||
Sbjct 19469 TCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| |||| || || |||||||| || || || ||||| ||||| | | ||
Sbjct 19792 AGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGG 19851
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||||| || || || |||| ||| || || || | || | |||||||
Sbjct 19852 CCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCC 19911
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | || || || | ||||||||||| ||
Sbjct 19912 TTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTG 19971
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||| || || || ||||||||
Sbjct 19972 ATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || ||||||||||| ||| ||||| | || |||| ||||||||| || ||
Sbjct 19079 CTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAA 19138
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || ||||| || || | |||| || |||||||| |||||| || ||
Sbjct 19139 GATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTGCTCTTCACGTT 19198
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | ||||||| ||||| |||| || || || ||||| ||||| || || ||
Sbjct 19199 GTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGAC 19258
Query 48755 AAAAATCTGCAT 48766
|| ||||||||
Sbjct 19259 GAAGATCTGCAT 19270
>seq1001
Length=42108
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||| | || || |||||||| || || || ||||| || || || | ||
Sbjct 35601 AGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 35542
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | |||||| ||||| || ||||| || || || || | ||| | |||||||
Sbjct 35541 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCC 35482
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || ||||||||| | ||
Sbjct 35481 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTG 35422
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||| | || || || || ||||||||
Sbjct 35421 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380929433531157
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |