Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1336 161 2e-34 seq1008 114 2e-20 >seq1336 Length=25880 Score = 161 bits (178), Expect = 2e-34 Identities = 864/1355 (64%), Gaps = 53/1355 (4%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||||| ||| || ||||||||||||| || ||||| || ||||||||||| | || || Sbjct 4568 GTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACT 4627 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 ||| || ||||||||||||| ||||||||||| | || || || | ||| || Sbjct 4628 GGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGAT-CTGCT 4686 Query 213068 CC--GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATG 213125 || || | | |||||||||| | || || | | || ||||||||| Sbjct 4687 CCTTGAGGGT-AGCCCAGTCCC---------AAAGATCAGAGGGAGTGACATTCCACATG 4736 Query 213126 TCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGC 213185 ||| |||| | ||||||| || || ||||| ||||| ||||| | || | Sbjct 4737 TCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCT 4796 Query 213186 TCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCC 213245 ||||| || | ||| || || || || || | ||| ||||| ||||| |||| | Sbjct 4797 TCCTTAGCAATCTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTGC 4856 Query 213246 CTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 ||||||||| || || || || || ||||| | |||| ||| Sbjct 4857 TTGTTGAGCTGTCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGAAGGTATCG 4916 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT-GGAGCACTC 213364 || || |||||||| |||| || || || | ||| | || ||| || | || ||| Sbjct 4917 GCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTACGTGC-CTC 4975 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 | || || ||| |||||||| |||| || ||||| | |||| ||| Sbjct 4976 AGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTGGGT 5035 Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGC-CCCCG-----TCCTGCACAAACTC 213478 || | | ||| || ||| || | |||| ||| | | ||| || Sbjct 5036 TACCTCGTGCAG---CTTTTGA---AAATCATAGCTTTCCGAGTTATAGTCCACGAAGGA 5089 Query 213479 AGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCC 213536 || | || ||| |||| ||||||||| || || || ||| ||| | ||||||| Sbjct 5090 CGGTAAAGCCATGGATGCCAAGTTGCAAACAGCAACTTCATCTG-GAG-CACTGTACTCA 5147 Query 213537 ATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTT 213596 |||||||| ||||| || || | || || || |||||||||| ||| ||| || Sbjct 5148 ATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGG-TTGCTCTT 5206 Query 213597 GCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAG 213655 ||| ||||| ||||||||||||||| ||||| || |||||| ||| | | | || Sbjct 5207 GCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAG 5266 Query 213656 TATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGC 213712 | |||| |||||| | | ||| || | || ||| | || || | | ||| Sbjct 5267 AA--TGGCATACCAGAGCTTCTGGGCTTTTA----TCGTCTGGCGGCCGCGACCCTCAGC 5320 Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA 213772 || |||| |||||||| | | || || | || |||| | | || || | ||| Sbjct 5321 TTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACA 5380 Query 213773 -GGATGCGGGACACATGAGGCTCCAG-TCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830 | |||| ||||| || ||||| | || || |||| |||| | ||||||||| Sbjct 5381 CTCGTTCGGG-CACATCAGTGTCCAGCTGCCGTTCTTCTC-AACTCGTTTCATGAACAGA 5438 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT 213890 || || | ||| || || ||| ||||| | | | || || || ||| Sbjct 5439 TCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTC 5498 Query 213891 TTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAG 213950 || |||||||| || || ||||| | |||| ||||||||| || | ||| || ||||| Sbjct 5499 TTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAA 5558 Query 213951 GCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGC 214007 |||||||| | | || || || || || || | ||| ||||||||| ||| Sbjct 5559 GCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGT 5618 Query 214008 AGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCC 214067 | | ||| || | || || ||| || ||||| || || || || ||||| | ||| Sbjct 5619 AACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCA 5678 Query 214068 C--TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGC 214125 | | | || ||| || || || || || || |||||| ||||| || || Sbjct 5679 CGGATACGATGTACAT--TCAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATG 5736 Query 214126 GCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGC 214185 | | || || ||||| | || || |||||| | | || | |||||||||| Sbjct 5737 TTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGG 5796 Query 214186 TCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAA 214245 || | ||| ||| | | |||| ||||| || || ||| |||||| | | Sbjct 5797 AAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGT 5856 Query 214246 ACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACT 214280 | ||| || | ||| |||||||||| |||||| Sbjct 5857 ATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACT 5891 >seq1008 Length=41606 Score = 114 bits (126), Expect = 2e-20 Identities = 298/446 (67%), Gaps = 25/446 (6%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | || || |||||||||||||| || | | ||| |||||||| Sbjct 2407 CTGGTAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTC 2348 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 |||||| ||| ||||||| | | || ||| | ||| ||||| | |||| Sbjct 2347 CATGAAATCGAACGGGTTGGTAGAGCGGTAGACCT-TCTCATTGCCCAAAGCGACAAGCA 2289 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| || ||| |||| ||||| | ||||||| | ||||| || | || Sbjct 2288 GACGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGAGCAG-- 2231 Query 48018 ACACG---GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 || || || | ||||| ||| || || || | ||| ||| |||||| || | | || Sbjct 2230 AC-CGCAAGGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGCATCGACGATAA 2172 Query 48075 TCTGCTTA-ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGC 48127 |||||| ||| ||| |||| || || ||| ||| || | | | Sbjct 2171 -CTGCTTCTACG----ACTTC-----TTTGCTGGGCCGGTTCTTCAAGTGGGAAAACAAT 2122 Query 48128 ATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAG 48187 | ||||||||||| |||| | |||||||| || ||||||| |||| |||||| Sbjct 2121 AGACAGGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTC 2062 Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||| | || | || ||||||||||| || | ||||||| || |||| Sbjct 2061 AGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACCGCTGAAG 2002 Query 48248 AAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || || || || ||||| || Sbjct 2001 AAGATACCTTCAACGGCAGCGAAAGC 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931512317922560