Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 161 2e-34
seq1008 114 2e-20
>seq1336
Length=25880
Score = 161 bits (178), Expect = 2e-34
Identities = 864/1355 (64%), Gaps = 53/1355 (4%)
Strand=Plus/Plus
Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007
||||| ||| || ||||||||||||| || ||||| || ||||||||||| | || ||
Sbjct 4568 GTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACT 4627
Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067
||| || ||||||||||||| ||||||||||| | || || || | ||| ||
Sbjct 4628 GGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGAT-CTGCT 4686
Query 213068 CC--GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATG 213125
|| || | | |||||||||| | || || | | || |||||||||
Sbjct 4687 CCTTGAGGGT-AGCCCAGTCCC---------AAAGATCAGAGGGAGTGACATTCCACATG 4736
Query 213126 TCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGC 213185
||| |||| | ||||||| || || ||||| ||||| ||||| | || |
Sbjct 4737 TCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCT 4796
Query 213186 TCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCC 213245
||||| || | ||| || || || || || | ||| ||||| ||||| |||| |
Sbjct 4797 TCCTTAGCAATCTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTGC 4856
Query 213246 CTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305
||||||||| || || || || || ||||| | |||| |||
Sbjct 4857 TTGTTGAGCTGTCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGAAGGTATCG 4916
Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT-GGAGCACTC 213364
|| || |||||||| |||| || || || | ||| | || ||| || | || |||
Sbjct 4917 GCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTACGTGC-CTC 4975
Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424
| || || ||| |||||||| |||| || ||||| | |||| |||
Sbjct 4976 AGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTGGGT 5035
Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGC-CCCCG-----TCCTGCACAAACTC 213478
|| | | ||| || ||| || | |||| ||| | | ||| ||
Sbjct 5036 TACCTCGTGCAG---CTTTTGA---AAATCATAGCTTTCCGAGTTATAGTCCACGAAGGA 5089
Query 213479 AGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCC 213536
|| | || ||| |||| ||||||||| || || || ||| ||| | |||||||
Sbjct 5090 CGGTAAAGCCATGGATGCCAAGTTGCAAACAGCAACTTCATCTG-GAG-CACTGTACTCA 5147
Query 213537 ATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTT 213596
|||||||| ||||| || || | || || || |||||||||| ||| ||| ||
Sbjct 5148 ATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGG-TTGCTCTT 5206
Query 213597 GCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAG 213655
||| ||||| ||||||||||||||| ||||| || |||||| ||| | | | ||
Sbjct 5207 GCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAG 5266
Query 213656 TATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGC 213712
| |||| |||||| | | ||| || | || ||| | || || | | |||
Sbjct 5267 AA--TGGCATACCAGAGCTTCTGGGCTTTTA----TCGTCTGGCGGCCGCGACCCTCAGC 5320
Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA 213772
|| |||| |||||||| | | || || | || |||| | | || || | |||
Sbjct 5321 TTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACA 5380
Query 213773 -GGATGCGGGACACATGAGGCTCCAG-TCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830
| |||| ||||| || ||||| | || || |||| |||| | |||||||||
Sbjct 5381 CTCGTTCGGG-CACATCAGTGTCCAGCTGCCGTTCTTCTC-AACTCGTTTCATGAACAGA 5438
Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT 213890
|| || | ||| || || ||| ||||| | | | || || || |||
Sbjct 5439 TCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTC 5498
Query 213891 TTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAG 213950
|| |||||||| || || ||||| | |||| ||||||||| || | ||| || |||||
Sbjct 5499 TTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAA 5558
Query 213951 GCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGC 214007
|||||||| | | || || || || || || | ||| ||||||||| |||
Sbjct 5559 GCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGT 5618
Query 214008 AGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCC 214067
| | ||| || | || || ||| || ||||| || || || || ||||| | |||
Sbjct 5619 AACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCA 5678
Query 214068 C--TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGC 214125
| | | || ||| || || || || || || |||||| ||||| || ||
Sbjct 5679 CGGATACGATGTACAT--TCAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATG 5736
Query 214126 GCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGC 214185
| | || || ||||| | || || |||||| | | || | ||||||||||
Sbjct 5737 TTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGG 5796
Query 214186 TCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAA 214245
|| | ||| ||| | | |||| ||||| || || ||| |||||| | |
Sbjct 5797 AAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGT 5856
Query 214246 ACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACT 214280
| ||| || | ||| |||||||||| ||||||
Sbjct 5857 ATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACT 5891
>seq1008
Length=41606
Score = 114 bits (126), Expect = 2e-20
Identities = 298/446 (67%), Gaps = 25/446 (6%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || || | || || |||||||||||||| || | | ||| ||||||||
Sbjct 2407 CTGGTAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTC 2348
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
|||||| ||| ||||||| | | || ||| | ||| ||||| | ||||
Sbjct 2347 CATGAAATCGAACGGGTTGGTAGAGCGGTAGACCT-TCTCATTGCCCAAAGCGACAAGCA 2289
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| |||| || ||| |||| ||||| | ||||||| | ||||| || | ||
Sbjct 2288 GACGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGAGCAG-- 2231
Query 48018 ACACG---GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
|| || || | ||||| ||| || || || | ||| ||| |||||| || | | ||
Sbjct 2230 AC-CGCAAGGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGCATCGACGATAA 2172
Query 48075 TCTGCTTA-ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGC 48127
|||||| ||| ||| |||| || || ||| ||| || | | |
Sbjct 2171 -CTGCTTCTACG----ACTTC-----TTTGCTGGGCCGGTTCTTCAAGTGGGAAAACAAT 2122
Query 48128 ATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAG 48187
| ||||||||||| |||| | |||||||| || ||||||| |||| ||||||
Sbjct 2121 AGACAGGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTC 2062
Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247
|| || ||||| | || | || ||||||||||| || | ||||||| || ||||
Sbjct 2061 AGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACCGCTGAAG 2002
Query 48248 AAGATGCCCTCCACTGCCGCGAACGC 48273
||||| || || || || ||||| ||
Sbjct 2001 AAGATACCTTCAACGGCAGCGAAAGC 1976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931512317922560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |