Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1336 136 7e-27 seq1008 107 4e-18 >seq1336 Length=25880 Score = 136 bits (150), Expect = 7e-27 Identities = 313/459 (68%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGAT 221807 |||| |||||||| || ||||| || | ||| || || ||||||| || || | Sbjct 5142 TACTCAATGATCTCAGTGCAGAGATTA--GAACTACGAATTGTACCCAGGTTCTTCTGGT 5199 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||||||| ||||||||||||||| ||||| |||||||| ||||| Sbjct 5200 TGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAG 5259 Query 221868 CCACCAGAATCTTGTCCCAGAG-TTCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTC 221925 || | ||||| | |||||| |||| ||| | | ||| || | | || |||||| Sbjct 5260 CCTCTAGAATGGCATACCAGAGCTTCT-GGGCTTTTATCGT-CTGGCGGCCGCGACCCTC 5317 Query 221926 GGTCTTTTCATAC--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGG 221983 | ||||||| | ||| || || ||||||| |||||||| | ||| | || Sbjct 5318 AG---CTTCATACTTCTCGTAGAGGGC--TTCAAACTCATCACCGTAGACATCGGCAAGA 5372 Query 221984 CCTGGACACCTGGCGGGACACATCAGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCAT 222042 || | |||| | || |||||||| ||||| ||| ||| | | || | | ||| Sbjct 5373 CCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGC-CGTTCTTCTCAACTCGTTTCAT 5431 Query 222043 GAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCC 222102 ||| || || || ||||| || || | ||||| || | | || ||||| || Sbjct 5432 GAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACC 5491 Query 222103 GTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGAC 222162 || ||| || | |||||||| |||||||| | || | ||||||||| || || || | Sbjct 5492 GTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAAT 5551 Query 222163 GGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | |||||| ||||| || || ||||| ||||| || Sbjct 5552 AGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGAC 5590 >seq1008 Length=41606 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 || |||| | | || ||| | || || ||||| || || || ||||| ||||||||| | Sbjct 1955 ACTTTTGCCCAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCT 2014 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 || || | ||||||||||||||| || || |||||||| ||| ||| || ||| Sbjct 2015 TTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAAC 2074 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||||||||| | ||||| |||||||||| || |||||||| || Sbjct 2075 GAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGCCTGTCT 2121 Score = 84.2 bits (92), Expect = 4e-11 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||| || | || |||||| || || ||||| |||||| Sbjct 1507 ATCTGGCAAATGTACAAGAAAGCCGAGGCATCCTTCTGGACTGCAGAGGAGATCGATCTG 1566 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||||||| | ||| |||| || | | ||| || || || | | ||| | Sbjct 1567 TCCAAGGACCTCCACGACTGGAACAACCGAATCAACGAAGACGAGAAATACTTCATTTCC 1626 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | ||||| |||||||| ||||| || ||||| || ||||||||||| ||| | Sbjct 1627 CACATCTTGGCCTTCTTTGCCGCCTCGGACGGTATCGTCAACGAGAATCTTGTTGAGCGT 1686 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | | | || | | || ||||||||||||||||| Sbjct 1687 TTCAGTGGCGAGGTTCAGATTCCCGAAGCTCGA-TGCTTCTACGGTTTCCAGAT 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928824377024960