Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1413 95.1 8e-14 seq1239 91.5 1e-12 >seq1413 Length=23416 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||||||||| ||||| | ||||| || || ||||| || || ||||| Sbjct 19854 ATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTT 19913 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| |||||||| |||||| || ||||| || | | | | | ||| ||| | Sbjct 19914 GTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAA-GGTGA 19972 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||||||||||||||| || || Sbjct 19973 TGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTG 20006 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| || || || || ||| || || | ||| ||||| ||| |||| Sbjct 19049 ACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATC-GCTCAGAG 19107 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| |||||| || ||||| ||||| || ||||| || || || || |||||||| | Sbjct 19108 TTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATAC 19167 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 |||||||||| |||||||| || || ||||| ||||| | | | | || || Sbjct 19168 CTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCA 19227 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||| || || || || || | ||||| ||||| || || Sbjct 19228 A-GGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTG 19267 >seq1239 Length=29790 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| ||||| || |||||||| || |||||||| || || |||| Sbjct 10777 ATGCCGTCGTCACTGTTCCTGCATACTTCAATGATTCCCAGCGTCAAGCTACCAAGGATG 10836 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||| | ||||||||||| | ||| | | || || || || || ||||| | Sbjct 10837 CAGGTCAGATTTCTGGTCTTAATGTCCTGCGTGTGGTCAACGAGCCTACTGCTGCCGCTC 10896 Query 474855 TTGCTTATGGTCTTGATAAG 474874 |||| || ||||| || ||| Sbjct 10897 TTGCATACGGTCTGGAGAAG 10916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268103747955332