Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1336 190 2e-43 >seq1336 Length=25880 Score = 190 bits (210), Expect = 2e-43 Identities = 887/1392 (64%), Gaps = 27/1392 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || | || || || || || |||| ||| Sbjct 5947 CCTCAGCACATGATCATGCGTGTGGCGGTAGGTATTTGGGGAGACGATGTTGAGAAAGTC 5888 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||||| | || |||| || || | || || || || Sbjct 5887 CTCGAGACCTACAACCTCATGTCCCTCAAATAC-TTCACCCATGCTTCCCCTACACTGTT 5829 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||||||| || || || |||||||| |||||| | ||| || || || || Sbjct 5828 CAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAAGATGA 5769 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || | || || |||| || |||| ||||| || || ||| |||||| Sbjct 5768 TAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATGGCTGG 5709 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || ||||| || | | ||| | | | |||| ||| ||| || || || Sbjct 5708 CGGAATTGGCCTGAATGTACATCGTATCCGTGCCACGGGCTCTTACATTGCCGGTACCAA 5649 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || |||| || | || ||| | ||||| || ||| ||| || ||||| || Sbjct 5648 TGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCCGCTACGT 5589 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 |||||| || | || ||| | | || | ||| | ||||| ||||| | Sbjct 5588 CGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGTGGCACTC 5529 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAG 75687 ||| | | |||||||| || | ||| ||||| ||| | || || | ||| | | Sbjct 5528 GGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTCGTGCTCG 5469 Query 75688 AGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGG 75747 || ||||| | |||| |||||||| || || |||||||| || |||||| || || Sbjct 5468 TGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGAAGAACGG 5409 Query 75748 TCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGA 75807 ||| | || | || || || || | ||||| |||| | ||||| || Sbjct 5408 CAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACGGTGATGA 5349 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGC 75867 |||||||||||||||| |||||||||| |||||| | | | ||| || ||| Sbjct 5348 GTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTCGCGGCCGCCAGACGATAAAAGC 5289 Query 75868 CGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | | || | | ||| | || ||||| | | ||||| |||||||||| || | |||| Sbjct 5288 C-CAGAAGCTCTGGTATGCCATTCTAGAGGCTCAGACAGAGACTGGAAACCCCTTCATGC 5230 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | |||||||| || ||||| ||||| ||||| |||| ||||| || | Sbjct 5229 TCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAACCTGGGTACAATTCGTAGTT 5170 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 | ||||| ||||| || || | ||||||| | | ||||| ||||||||||| | Sbjct 5169 CTAATCTCTGCACTGAGATCATTGAGTACAGTGCTCCAGATGAAGTTGCTGTTTGCAACT 5110 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA-GACTCG--CACTTTTGATTATG 76103 ||||||| || || | || || || || | ||||| | | ||||| | Sbjct 5109 TGGCATCCATGGCTTTACC---GTCCTTCGTGGACTATAACTCGGAAAGCTATGATTTTC 5053 Query 76104 AAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 |||| || || || | || | ||||| ||||| ||| ||||||| ||| || Sbjct 5052 AAAAGCTGCACGAGGTAACCCAAGTTGTTGTGCGCAATCTGAACAGAGTCATCGACGCAA 4993 Query 76164 ATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 | ||||| || |||| || || || || ||||| ||| | ||||||||| Sbjct 4992 ACCACTATCCTGTCCCTGAG---GCACGTAACAGCAACATGCGCCACCGCCCTATTGGTC 4936 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG 76280 | ||||| || ||||| || ||| || || |||| | ||||| || | Sbjct 4935 TCGGTGTCCAGGGTCTAGCCGATACCTTCCTTGCTCTCCGCATGCCTTTTGAATCGCCCG 4876 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC-- 76338 |||| || | || | || ||||| |||||||| || || | || || Sbjct 4875 AAGCTCGACAGCTCAACAAGCAGATTTTTGAGACCATGTACCATGCCGCTTTGACTGCAT 4816 Query 76339 GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 | | | || | ||| | | ||||| | || || | ||||| ||||| | || Sbjct 4815 CAATGGAGA--TTGCTAAGGAAGAAGGTACTTACTCTACTTACGAGGGCTCTCCTGTTTC 4758 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACTGG 76456 ||||| | ||||||| ||| |||| |||| || | || || | | | |||||| Sbjct 4757 TCAAGGCATTCTTCAGTATGACATGT-GGAATGTCACTCC-CTCTGATCTTTGGGACTGG 4700 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 | | |||||||| | ||||| | | ||| | || |||||||| | ||||| || Sbjct 4699 GCTACCCTCAAGGAGCAGATCAAACAACATGGTGTACGCAACAGTCTCCTCATGGCTCCC 4640 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || ||| ||| | || || |||| ||||| |||||||| || || ||||| Sbjct 4639 ATGCCGACCGCCAGTACCTCGCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTACACG 4580 Query 76577 ACAAACATCTAC 76588 | ||||| ||| Sbjct 4579 TCGAACATTTAC 4568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556482925920